miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26028 3' -56.9 NC_005342.2 + 36071 0.66 0.575603
Target:  5'- cGCGCCGCUGcGCAUgcCGGGcCGCgacgacaaggUGCUCg -3'
miRNA:   3'- -UGCGGCGGU-UGUA--GCUCuGCG----------ACGAG- -5'
26028 3' -56.9 NC_005342.2 + 6804 0.66 0.532221
Target:  5'- gAC-UCGCCcGCGUCGAGcaGCGcCUGUUCg -3'
miRNA:   3'- -UGcGGCGGuUGUAGCUC--UGC-GACGAG- -5'
26028 3' -56.9 NC_005342.2 + 37219 0.66 0.536511
Target:  5'- -gGCCGCCGgccacggccACGUgaagaucagucguucCGGuGCGCUGCUCg -3'
miRNA:   3'- ugCGGCGGU---------UGUA---------------GCUcUGCGACGAG- -5'
26028 3' -56.9 NC_005342.2 + 3365 0.66 0.590991
Target:  5'- gGCGUCGCCGuCGUCGcgggagcuucggugaAGAacaGCUGCg- -3'
miRNA:   3'- -UGCGGCGGUuGUAGC---------------UCUg--CGACGag -5'
26028 3' -56.9 NC_005342.2 + 44754 0.66 0.542969
Target:  5'- gGCGCUGgCGGCG-CGcAGACGCUGaaCa -3'
miRNA:   3'- -UGCGGCgGUUGUaGC-UCUGCGACgaG- -5'
26028 3' -56.9 NC_005342.2 + 44955 0.66 0.542969
Target:  5'- gUGCCGaccuguCCGGCAUCGAagcgcgcauGGCGCcuugGCUCg -3'
miRNA:   3'- uGCGGC------GGUUGUAGCU---------CUGCGa---CGAG- -5'
26028 3' -56.9 NC_005342.2 + 46470 0.66 0.542969
Target:  5'- gACGCacUCGGCGUCGaAGuguccgccGCGCUGCUCg -3'
miRNA:   3'- -UGCGgcGGUUGUAGC-UC--------UGCGACGAG- -5'
26028 3' -56.9 NC_005342.2 + 247 0.66 0.553786
Target:  5'- cACGCCGCCgAGCA-CGGucacggucGACGuCUGCg- -3'
miRNA:   3'- -UGCGGCGG-UUGUaGCU--------CUGC-GACGag -5'
26028 3' -56.9 NC_005342.2 + 16826 0.66 0.553786
Target:  5'- uCGCgGCCAagGCgAUCGAcgGGCGaCUGUUCg -3'
miRNA:   3'- uGCGgCGGU--UG-UAGCU--CUGC-GACGAG- -5'
26028 3' -56.9 NC_005342.2 + 12253 0.66 0.532221
Target:  5'- gGCGaCCGCgAACcaggucgCGAGcACGgUGCUCg -3'
miRNA:   3'- -UGC-GGCGgUUGua-----GCUC-UGCgACGAG- -5'
26028 3' -56.9 NC_005342.2 + 38357 0.66 0.532221
Target:  5'- cGCGCCGCCGGCAgcCGGuGCGCaaccgGC-Cg -3'
miRNA:   3'- -UGCGGCGGUUGUa-GCUcUGCGa----CGaG- -5'
26028 3' -56.9 NC_005342.2 + 22657 0.66 0.542969
Target:  5'- cCGUCGCCGGCGUCGGcccgguugcGACGCcgaacacGCUg -3'
miRNA:   3'- uGCGGCGGUUGUAGCU---------CUGCGa------CGAg -5'
26028 3' -56.9 NC_005342.2 + 28246 0.66 0.575603
Target:  5'- cACGCCaCCAGCGcCGAGcACGCgaGCa- -3'
miRNA:   3'- -UGCGGcGGUUGUaGCUC-UGCGa-CGag -5'
26028 3' -56.9 NC_005342.2 + 17142 0.66 0.571223
Target:  5'- cGCGCCGCUGACGggCcAGGCGCcgaaccugcaggcGCUCg -3'
miRNA:   3'- -UGCGGCGGUUGUa-GcUCUGCGa------------CGAG- -5'
26028 3' -56.9 NC_005342.2 + 2036 0.66 0.564667
Target:  5'- gGCGCUGauCCGGCG-CGAGACGC-GCcCa -3'
miRNA:   3'- -UGCGGC--GGUUGUaGCUCUGCGaCGaG- -5'
26028 3' -56.9 NC_005342.2 + 38733 0.66 0.564667
Target:  5'- uAUGCCGCacGCggCGAGGCGCccccGUUCg -3'
miRNA:   3'- -UGCGGCGguUGuaGCUCUGCGa---CGAG- -5'
26028 3' -56.9 NC_005342.2 + 34101 0.66 0.564667
Target:  5'- gUGCCgGCCGACuUCGcgcGGCGCggcgcGCUCa -3'
miRNA:   3'- uGCGG-CGGUUGuAGCu--CUGCGa----CGAG- -5'
26028 3' -56.9 NC_005342.2 + 6695 0.66 0.564667
Target:  5'- -gGUCGUgAGCAUCGcGACGCUGaCg- -3'
miRNA:   3'- ugCGGCGgUUGUAGCuCUGCGAC-Gag -5'
26028 3' -56.9 NC_005342.2 + 22749 0.66 0.553786
Target:  5'- aGCGUCGCgggcguCGACGUCGAGuCGCgcagugaGUUCg -3'
miRNA:   3'- -UGCGGCG------GUUGUAGCUCuGCGa------CGAG- -5'
26028 3' -56.9 NC_005342.2 + 36651 0.66 0.542969
Target:  5'- cGCGCCGCCuuCAUCGc-GCGCgaccagUGCa- -3'
miRNA:   3'- -UGCGGCGGuuGUAGCucUGCG------ACGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.