miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26028 3' -56.9 NC_005342.2 + 41740 0.77 0.110677
Target:  5'- cGCGCgGCCAACGagCGGGGCG-UGCUCg -3'
miRNA:   3'- -UGCGgCGGUUGUa-GCUCUGCgACGAG- -5'
26028 3' -56.9 NC_005342.2 + 19788 0.68 0.429984
Target:  5'- gUGCCGC--GCGUUGAGugcgauGCGCUGCUg -3'
miRNA:   3'- uGCGGCGguUGUAGCUC------UGCGACGAg -5'
26028 3' -56.9 NC_005342.2 + 3193 0.68 0.459506
Target:  5'- cGCGCCGCCcGCccCGAuGACGCcggGCa- -3'
miRNA:   3'- -UGCGGCGGuUGuaGCU-CUGCGa--CGag -5'
26028 3' -56.9 NC_005342.2 + 3365 0.66 0.590991
Target:  5'- gGCGUCGCCGuCGUCGcgggagcuucggugaAGAacaGCUGCg- -3'
miRNA:   3'- -UGCGGCGGUuGUAGC---------------UCUg--CGACGag -5'
26028 3' -56.9 NC_005342.2 + 18492 0.74 0.192893
Target:  5'- cCGCUGCCGGCAcgcCGAcgGACGCUGCa- -3'
miRNA:   3'- uGCGGCGGUUGUa--GCU--CUGCGACGag -5'
26028 3' -56.9 NC_005342.2 + 30820 0.74 0.192893
Target:  5'- gGC-CCGUCAGCGgcgCGAGcUGCUGCUCg -3'
miRNA:   3'- -UGcGGCGGUUGUa--GCUCuGCGACGAG- -5'
26028 3' -56.9 NC_005342.2 + 38702 0.71 0.285923
Target:  5'- -gGCCGaUCGACccgaacuggcauGUCGAGGCGCUGCa- -3'
miRNA:   3'- ugCGGC-GGUUG------------UAGCUCUGCGACGag -5'
26028 3' -56.9 NC_005342.2 + 32241 0.71 0.293242
Target:  5'- aGCGuUUGCCGACGUCGcgcGGCGC-GCUCg -3'
miRNA:   3'- -UGC-GGCGGUUGUAGCu--CUGCGaCGAG- -5'
26028 3' -56.9 NC_005342.2 + 10648 0.71 0.316073
Target:  5'- cGCGCCgGCCGgugcacgcuauGCAcUCGGuucGACGCUGUUCg -3'
miRNA:   3'- -UGCGG-CGGU-----------UGU-AGCU---CUGCGACGAG- -5'
26028 3' -56.9 NC_005342.2 + 11788 0.69 0.410933
Target:  5'- gACGCgGCCAuCAgcgCGAcGGCGC-GCUCc -3'
miRNA:   3'- -UGCGgCGGUuGUa--GCU-CUGCGaCGAG- -5'
26028 3' -56.9 NC_005342.2 + 44553 0.7 0.332025
Target:  5'- gACGaCGCUGGCcgCGAGACGCUGaagaagaUCg -3'
miRNA:   3'- -UGCgGCGGUUGuaGCUCUGCGACg------AG- -5'
26028 3' -56.9 NC_005342.2 + 46328 0.71 0.308317
Target:  5'- gACGCC-CCGAUAUCGGGGCGUUaaacuuuaGCUa -3'
miRNA:   3'- -UGCGGcGGUUGUAGCUCUGCGA--------CGAg -5'
26028 3' -56.9 NC_005342.2 + 42790 0.76 0.146615
Target:  5'- gACGCCGC--ACAUCGAGACGCga-UCa -3'
miRNA:   3'- -UGCGGCGguUGUAGCUCUGCGacgAG- -5'
26028 3' -56.9 NC_005342.2 + 28143 0.7 0.357046
Target:  5'- cGCGCCGCCGaggcugACAgCGAuGCGCauccggUGCUCg -3'
miRNA:   3'- -UGCGGCGGU------UGUaGCUcUGCG------ACGAG- -5'
26028 3' -56.9 NC_005342.2 + 20736 0.75 0.168335
Target:  5'- cGCGCUGCCgGACAUCGccGACGCgGCUg -3'
miRNA:   3'- -UGCGGCGG-UUGUAGCu-CUGCGaCGAg -5'
26028 3' -56.9 NC_005342.2 + 38115 0.71 0.293242
Target:  5'- gACGCCgGCCAcggucaagacgGCgAUCGAGACGCUuGC-Cg -3'
miRNA:   3'- -UGCGG-CGGU-----------UG-UAGCUCUGCGA-CGaG- -5'
26028 3' -56.9 NC_005342.2 + 37873 0.69 0.374447
Target:  5'- -gGCCGCCGAUcUUGGcACGCcGCUCg -3'
miRNA:   3'- ugCGGCGGUUGuAGCUcUGCGaCGAG- -5'
26028 3' -56.9 NC_005342.2 + 24530 0.68 0.439702
Target:  5'- uGCGaaaCGCUGACGUUGAGAUuggcgaucgucgGCUGCUg -3'
miRNA:   3'- -UGCg--GCGGUUGUAGCUCUG------------CGACGAg -5'
26028 3' -56.9 NC_005342.2 + 41131 0.75 0.173012
Target:  5'- cACG-CGCaCAugAUCGAacaGGCGCUGCUCg -3'
miRNA:   3'- -UGCgGCG-GUugUAGCU---CUGCGACGAG- -5'
26028 3' -56.9 NC_005342.2 + 29698 0.71 0.281601
Target:  5'- cUGCCGCCAGCGcCGAaugcgagccccaugcGACGUcGCUCg -3'
miRNA:   3'- uGCGGCGGUUGUaGCU---------------CUGCGaCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.