miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26028 5' -58.5 NC_005342.2 + 2727 0.68 0.403362
Target:  5'- gAGAuuGCGGcCGCCG---UGCCGGUCGc -3'
miRNA:   3'- gUCU--UGCC-GCGGUuggACGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 28478 0.67 0.489587
Target:  5'- -cGAGCGccGCGUCGACCgcGCgGGUCGcGg -3'
miRNA:   3'- guCUUGC--CGCGGUUGGa-CGgCCAGC-C- -5'
26028 5' -58.5 NC_005342.2 + 30214 0.66 0.499707
Target:  5'- -cGAGCGuGCgGCCGACCaggcUGCCGGcCa- -3'
miRNA:   3'- guCUUGC-CG-CGGUUGG----ACGGCCaGcc -5'
26028 5' -58.5 NC_005342.2 + 1616 0.66 0.520216
Target:  5'- --cGGCGGCGUagcccugaauGCgCUGCgCGGUCGGa -3'
miRNA:   3'- gucUUGCCGCGgu--------UG-GACG-GCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 32542 0.66 0.545249
Target:  5'- aGGAACGccacgugcaacaugaGCG-CGGCCUGCuCGaGUCGGu -3'
miRNA:   3'- gUCUUGC---------------CGCgGUUGGACG-GC-CAGCC- -5'
26028 5' -58.5 NC_005342.2 + 45292 0.67 0.479563
Target:  5'- ---cAUGGCGCuCGACCaGCCcGGUCGc -3'
miRNA:   3'- gucuUGCCGCG-GUUGGaCGG-CCAGCc -5'
26028 5' -58.5 NC_005342.2 + 23147 0.66 0.520216
Target:  5'- -cGAuguUGGUGCCAucGCCcgucacGUCGGUCGGu -3'
miRNA:   3'- guCUu--GCCGCGGU--UGGa-----CGGCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 17821 0.66 0.529554
Target:  5'- gCAGucgcuACGGCGCgCGAauucgguCCggcGCCGGUCGc -3'
miRNA:   3'- -GUCu----UGCCGCG-GUU-------GGa--CGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 10567 0.66 0.520216
Target:  5'- -----gGGCcgGCCGACgaGCgGGUCGGg -3'
miRNA:   3'- gucuugCCG--CGGUUGgaCGgCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 29636 0.66 0.514028
Target:  5'- uGGAACGGCGUgAggaucgugcgcacgcGCgUGCCGG-CGa -3'
miRNA:   3'- gUCUUGCCGCGgU---------------UGgACGGCCaGCc -5'
26028 5' -58.5 NC_005342.2 + 4039 0.67 0.489587
Target:  5'- aCAGGuCGGCGgUcGCCaUGCCGGgcagcCGGa -3'
miRNA:   3'- -GUCUuGCCGCgGuUGG-ACGGCCa----GCC- -5'
26028 5' -58.5 NC_005342.2 + 4946 0.67 0.440528
Target:  5'- uCGGcACGaGCGCaUAGCCgGCCGGgaUCGGc -3'
miRNA:   3'- -GUCuUGC-CGCG-GUUGGaCGGCC--AGCC- -5'
26028 5' -58.5 NC_005342.2 + 45691 0.73 0.203156
Target:  5'- cCGGccACGGCGCaCGACCUGCCGa-CGGc -3'
miRNA:   3'- -GUCu-UGCCGCG-GUUGGACGGCcaGCC- -5'
26028 5' -58.5 NC_005342.2 + 44039 1.09 0.000479
Target:  5'- gCAGAACGGCGCCAACCUGCCGGUCGGc -3'
miRNA:   3'- -GUCUUGCCGCGGUUGGACGGCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 17721 0.7 0.319628
Target:  5'- gGGAugGGacaaGCUGGCCggcaGCCuGGUCGGc -3'
miRNA:   3'- gUCUugCCg---CGGUUGGa---CGG-CCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 8975 0.74 0.178076
Target:  5'- -cGAucGCGGCGCgugcGCCUGCCGGccgcUCGGg -3'
miRNA:   3'- guCU--UGCCGCGgu--UGGACGGCC----AGCC- -5'
26028 5' -58.5 NC_005342.2 + 10080 0.7 0.327386
Target:  5'- -cGAGCGGCguGCCAagAUCggcgGCCGgGUCGGc -3'
miRNA:   3'- guCUUGCCG--CGGU--UGGa---CGGC-CAGCC- -5'
26028 5' -58.5 NC_005342.2 + 38926 0.7 0.327386
Target:  5'- gCAGAuCGGCGUCGACgUGUCgcaGGUCGc -3'
miRNA:   3'- -GUCUuGCCGCGGUUGgACGG---CCAGCc -5'
26028 5' -58.5 NC_005342.2 + 33256 0.69 0.351489
Target:  5'- uCAGAuCGGCuacaaucCCGACCUGCCGcUUGGc -3'
miRNA:   3'- -GUCUuGCCGc------GGUUGGACGGCcAGCC- -5'
26028 5' -58.5 NC_005342.2 + 27446 0.68 0.394386
Target:  5'- -cGAACGGCGCggCGGCg-GCCGGcagCGGu -3'
miRNA:   3'- guCUUGCCGCG--GUUGgaCGGCCa--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.