miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26028 5' -58.5 NC_005342.2 + 19545 0.75 0.139802
Target:  5'- -uGAugGGCGCCggUC-GCaCGGUCGGc -3'
miRNA:   3'- guCUugCCGCGGuuGGaCG-GCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 31680 0.68 0.421699
Target:  5'- -uGAACa-CGCCGAagccgcCCUGCuCGGUCGGa -3'
miRNA:   3'- guCUUGccGCGGUU------GGACG-GCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 8622 0.67 0.440528
Target:  5'- uCGGcGCGGCGcCCGGCUUGCuCGugacggugccGUCGGc -3'
miRNA:   3'- -GUCuUGCCGC-GGUUGGACG-GC----------CAGCC- -5'
26028 5' -58.5 NC_005342.2 + 32542 0.66 0.545249
Target:  5'- aGGAACGccacgugcaacaugaGCG-CGGCCUGCuCGaGUCGGu -3'
miRNA:   3'- gUCUUGC---------------CGCgGUUGGACG-GC-CAGCC- -5'
26028 5' -58.5 NC_005342.2 + 25710 0.71 0.275988
Target:  5'- gAGAAUGGCuugcucgccgGCCAGCUgcagGCCaGUCGGc -3'
miRNA:   3'- gUCUUGCCG----------CGGUUGGa---CGGcCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 44952 0.7 0.297187
Target:  5'- ----uCGGUGCCGACCUGuCCGGcaUCGa -3'
miRNA:   3'- gucuuGCCGCGGUUGGAC-GGCC--AGCc -5'
26028 5' -58.5 NC_005342.2 + 11806 0.7 0.326604
Target:  5'- aCGGcGCGcuccagcuuGCGCCGGuacaucgcuuccgUCUGCCGGUCGGc -3'
miRNA:   3'- -GUCuUGC---------CGCGGUU-------------GGACGGCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 46414 0.7 0.327386
Target:  5'- --uGGCGGCGCgcuacaaaAAgCUGCCGGUCGa -3'
miRNA:   3'- gucUUGCCGCGg-------UUgGACGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 37378 0.69 0.359798
Target:  5'- -cGAGCGcGCGcCCGACCcGCUcGUCGGc -3'
miRNA:   3'- guCUUGC-CGC-GGUUGGaCGGcCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 29543 0.68 0.403362
Target:  5'- -cGAuCGGCGC--GCC-GCCGGUCGa -3'
miRNA:   3'- guCUuGCCGCGguUGGaCGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 2727 0.68 0.403362
Target:  5'- gAGAuuGCGGcCGCCG---UGCCGGUCGc -3'
miRNA:   3'- gUCU--UGCC-GCGGUuggACGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 37167 0.69 0.335282
Target:  5'- -cGAACGGCGCCGACauuCCGG-CGc -3'
miRNA:   3'- guCUUGCCGCGGUUGgacGGCCaGCc -5'
26028 5' -58.5 NC_005342.2 + 28626 0.74 0.173402
Target:  5'- gCAGGcCGGCGCguACUUGCC-GUCGGu -3'
miRNA:   3'- -GUCUuGCCGCGguUGGACGGcCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 7280 0.68 0.403362
Target:  5'- aAGAucACGGCGCCccacguGCCUGCCGacuucuucuGaCGGa -3'
miRNA:   3'- gUCU--UGCCGCGGu-----UGGACGGC---------CaGCC- -5'
26028 5' -58.5 NC_005342.2 + 20441 0.72 0.214019
Target:  5'- --cGGCGGCGCgaAGCCUgcGCCGGUCGu -3'
miRNA:   3'- gucUUGCCGCGg-UUGGA--CGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 14352 0.69 0.335282
Target:  5'- uCAGGuCGGCGaucGCCUGCgCGGUCGc -3'
miRNA:   3'- -GUCUuGCCGCgguUGGACG-GCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 33107 0.68 0.403362
Target:  5'- gUAGAACGGCGau-GCCUG-CGGcgCGGc -3'
miRNA:   3'- -GUCUUGCCGCgguUGGACgGCCa-GCC- -5'
26028 5' -58.5 NC_005342.2 + 29740 0.68 0.431053
Target:  5'- uCGGGAuCGGacaucaggaaGUCGAUCUGCUGGUCGa -3'
miRNA:   3'- -GUCUU-GCCg---------CGGUUGGACGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 41537 0.72 0.225377
Target:  5'- aCGGcacGACGGCGcCCGGCC-GCgagCGGUCGGg -3'
miRNA:   3'- -GUC---UUGCCGC-GGUUGGaCG---GCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 3899 0.7 0.304528
Target:  5'- gCAGcGGCGGCagGCCGACCgGCaGGUUGGc -3'
miRNA:   3'- -GUC-UUGCCG--CGGUUGGaCGgCCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.