miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26028 5' -58.5 NC_005342.2 + 44039 1.09 0.000479
Target:  5'- gCAGAACGGCGCCAACCUGCCGGUCGGc -3'
miRNA:   3'- -GUCUUGCCGCGGUUGGACGGCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 19545 0.75 0.139802
Target:  5'- -uGAugGGCGCCggUC-GCaCGGUCGGc -3'
miRNA:   3'- guCUugCCGCGGuuGGaCG-GCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 28626 0.74 0.173402
Target:  5'- gCAGGcCGGCGCguACUUGCC-GUCGGu -3'
miRNA:   3'- -GUCUuGCCGCGguUGGACGGcCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 8975 0.74 0.178076
Target:  5'- -cGAucGCGGCGCgugcGCCUGCCGGccgcUCGGg -3'
miRNA:   3'- guCU--UGCCGCGgu--UGGACGGCC----AGCC- -5'
26028 5' -58.5 NC_005342.2 + 45691 0.73 0.203156
Target:  5'- cCGGccACGGCGCaCGACCUGCCGa-CGGc -3'
miRNA:   3'- -GUCu-UGCCGCG-GUUGGACGGCcaGCC- -5'
26028 5' -58.5 NC_005342.2 + 20441 0.72 0.214019
Target:  5'- --cGGCGGCGCgaAGCCUgcGCCGGUCGu -3'
miRNA:   3'- gucUUGCCGCGg-UUGGA--CGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 43320 0.72 0.214019
Target:  5'- aAGAccCGcGCGCCGGCCUGCCcGUCGc -3'
miRNA:   3'- gUCUu-GC-CGCGGUUGGACGGcCAGCc -5'
26028 5' -58.5 NC_005342.2 + 41537 0.72 0.225377
Target:  5'- aCGGcacGACGGCGcCCGGCC-GCgagCGGUCGGg -3'
miRNA:   3'- -GUC---UUGCCGC-GGUUGGaCG---GCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 482 0.72 0.237241
Target:  5'- gAGGccACGGCGCgCGACgUGCCGG-CGa -3'
miRNA:   3'- gUCU--UGCCGCG-GUUGgACGGCCaGCc -5'
26028 5' -58.5 NC_005342.2 + 9042 0.71 0.271896
Target:  5'- gGGAugcGCGG-GCCGugCUGCCGGUgcagcgcgcgcagcaCGGg -3'
miRNA:   3'- gUCU---UGCCgCGGUugGACGGCCA---------------GCC- -5'
26028 5' -58.5 NC_005342.2 + 25710 0.71 0.275988
Target:  5'- gAGAAUGGCuugcucgccgGCCAGCUgcagGCCaGUCGGc -3'
miRNA:   3'- gUCUUGCCG----------CGGUUGGa---CGGcCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 44952 0.7 0.297187
Target:  5'- ----uCGGUGCCGACCUGuCCGGcaUCGa -3'
miRNA:   3'- gucuuGCCGCGGUUGGAC-GGCC--AGCc -5'
26028 5' -58.5 NC_005342.2 + 3899 0.7 0.304528
Target:  5'- gCAGcGGCGGCagGCCGACCgGCaGGUUGGc -3'
miRNA:   3'- -GUC-UUGCCG--CGGUUGGaCGgCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 2844 0.7 0.304528
Target:  5'- cCAGGucuGCGGCcuuGCCGACCUggcGCUGGUCu- -3'
miRNA:   3'- -GUCU---UGCCG---CGGUUGGA---CGGCCAGcc -5'
26028 5' -58.5 NC_005342.2 + 17721 0.7 0.319628
Target:  5'- gGGAugGGacaaGCUGGCCggcaGCCuGGUCGGc -3'
miRNA:   3'- gUCUugCCg---CGGUUGGa---CGG-CCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 11806 0.7 0.326604
Target:  5'- aCGGcGCGcuccagcuuGCGCCGGuacaucgcuuccgUCUGCCGGUCGGc -3'
miRNA:   3'- -GUCuUGC---------CGCGGUU-------------GGACGGCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 10080 0.7 0.327386
Target:  5'- -cGAGCGGCguGCCAagAUCggcgGCCGgGUCGGc -3'
miRNA:   3'- guCUUGCCG--CGGU--UGGa---CGGC-CAGCC- -5'
26028 5' -58.5 NC_005342.2 + 38926 0.7 0.327386
Target:  5'- gCAGAuCGGCGUCGACgUGUCgcaGGUCGc -3'
miRNA:   3'- -GUCUuGCCGCGGUUGgACGG---CCAGCc -5'
26028 5' -58.5 NC_005342.2 + 46414 0.7 0.327386
Target:  5'- --uGGCGGCGCgcuacaaaAAgCUGCCGGUCGa -3'
miRNA:   3'- gucUUGCCGCGg-------UUgGACGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 14352 0.69 0.335282
Target:  5'- uCAGGuCGGCGaucGCCUGCgCGGUCGc -3'
miRNA:   3'- -GUCUuGCCGCgguUGGACG-GCCAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.