miRNA display CGI


Results 41 - 60 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26029 3' -56.9 NC_005342.2 + 39103 0.68 0.484734
Target:  5'- --cAAgGUGCGCGGCuaaC-CGCGCCg -3'
miRNA:   3'- ugcUUgCACGCGCCGuagGaGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 11186 0.68 0.483719
Target:  5'- cGCGcACGUgauucggGCGCGGC-UCCUUgccgGCGCUc -3'
miRNA:   3'- -UGCuUGCA-------CGCGCCGuAGGAG----UGCGG- -5'
26029 3' -56.9 NC_005342.2 + 37108 0.68 0.483719
Target:  5'- cGCGccGGCGUucuucccGCGCGGCGUCaagCGCGUg -3'
miRNA:   3'- -UGC--UUGCA-------CGCGCCGUAGga-GUGCGg -5'
26029 3' -56.9 NC_005342.2 + 25859 0.68 0.478658
Target:  5'- uGCGAAUcugcagcagcgcuugGUGCGCGaGCG-CCaaGCGCCg -3'
miRNA:   3'- -UGCUUG---------------CACGCGC-CGUaGGagUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 22063 0.68 0.474627
Target:  5'- -aGGGCGgcgaaGCGCGGCGcuuggCgCUCGCGCa -3'
miRNA:   3'- ugCUUGCa----CGCGCCGUa----G-GAGUGCGg -5'
26029 3' -56.9 NC_005342.2 + 4150 0.68 0.474627
Target:  5'- cGCGcuCGUGCugcaGCGGCGUgugCUUCuGCGCCu -3'
miRNA:   3'- -UGCuuGCACG----CGCCGUA---GGAG-UGCGG- -5'
26029 3' -56.9 NC_005342.2 + 9754 0.68 0.472619
Target:  5'- gGCGcuGCGUGCcgucccauuGCGGCAgcgcaaucaucgCgUCGCGCCa -3'
miRNA:   3'- -UGCu-UGCACG---------CGCCGUa-----------GgAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 8890 0.68 0.464627
Target:  5'- gGCGucgauGCGcGaCGCGGCuUCgUUCGCGCCg -3'
miRNA:   3'- -UGCu----UGCaC-GCGCCGuAG-GAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 47791 0.68 0.464627
Target:  5'- aGCcGGCGgGCGCacgGGCAguggaCUCGCGCCa -3'
miRNA:   3'- -UGcUUGCaCGCG---CCGUag---GAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 40582 0.68 0.464627
Target:  5'- gGCGAugGUcGCGCgacucGGUAUCUaCuGCGCCg -3'
miRNA:   3'- -UGCUugCA-CGCG-----CCGUAGGaG-UGCGG- -5'
26029 3' -56.9 NC_005342.2 + 40916 0.68 0.464627
Target:  5'- aACGAcuCGUGCGCgagGGCuaCCUguCGCCg -3'
miRNA:   3'- -UGCUu-GCACGCG---CCGuaGGAguGCGG- -5'
26029 3' -56.9 NC_005342.2 + 44900 0.68 0.464627
Target:  5'- uGCuGAUGcGCGCGGCAgCUguucCGCGCCa -3'
miRNA:   3'- -UGcUUGCaCGCGCCGUaGGa---GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 10271 0.68 0.464627
Target:  5'- ---cACGUuaCGCGGCAUCUuagCACGCCc -3'
miRNA:   3'- ugcuUGCAc-GCGCCGUAGGa--GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 30750 0.68 0.464627
Target:  5'- uGC-AGCaUGUGCGGCAcaUCCugcugaauguUCACGCCg -3'
miRNA:   3'- -UGcUUGcACGCGCCGU--AGG----------AGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 38986 0.68 0.454738
Target:  5'- cGCGAACGccGCGuCGGUcgCCgcCGCGCa -3'
miRNA:   3'- -UGCUUGCa-CGC-GCCGuaGGa-GUGCGg -5'
26029 3' -56.9 NC_005342.2 + 22969 0.68 0.454738
Target:  5'- gACGGGCG-GCGCGGaCGcagaCgUCGCGCUc -3'
miRNA:   3'- -UGCUUGCaCGCGCC-GUa---GgAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 19618 0.69 0.444963
Target:  5'- gGCGAGCGcggcgaGCGCGGCcgaCgCugGCCg -3'
miRNA:   3'- -UGCUUGCa-----CGCGCCGuagGaGugCGG- -5'
26029 3' -56.9 NC_005342.2 + 8755 0.69 0.444963
Target:  5'- gGCGAA-GUcGC-CGGCAaugCCUUGCGCCg -3'
miRNA:   3'- -UGCUUgCA-CGcGCCGUa--GGAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 25020 0.69 0.444963
Target:  5'- aACGGA-GUGCGCcggaaucgGGUAguUCgUCGCGCCg -3'
miRNA:   3'- -UGCUUgCACGCG--------CCGU--AGgAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 44822 0.69 0.444963
Target:  5'- gGCGAuacucgACGccugucUGCGCGGCGa--UCGCGCCu -3'
miRNA:   3'- -UGCU------UGC------ACGCGCCGUaggAGUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.