miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26029 3' -56.9 NC_005342.2 + 8755 0.69 0.444963
Target:  5'- gGCGAA-GUcGC-CGGCAaugCCUUGCGCCg -3'
miRNA:   3'- -UGCUUgCA-CGcGCCGUa--GGAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 8890 0.68 0.464627
Target:  5'- gGCGucgauGCGcGaCGCGGCuUCgUUCGCGCCg -3'
miRNA:   3'- -UGCu----UGCaC-GCGCCGuAG-GAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 8955 0.75 0.192833
Target:  5'- uGCGGcCGUGCGCGGCGgcgaCCgaCGCGCg -3'
miRNA:   3'- -UGCUuGCACGCGCCGUa---GGa-GUGCGg -5'
26029 3' -56.9 NC_005342.2 + 9178 0.7 0.371296
Target:  5'- uCGAucGCgGUGCGCaccgacuucGCAUCCaUCGCGCCg -3'
miRNA:   3'- uGCU--UG-CACGCGc--------CGUAGG-AGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 9374 0.69 0.435307
Target:  5'- cGCGGACG-G-GCGGCGUUCguaugGCGCCc -3'
miRNA:   3'- -UGCUUGCaCgCGCCGUAGGag---UGCGG- -5'
26029 3' -56.9 NC_005342.2 + 9754 0.68 0.472619
Target:  5'- gGCGcuGCGUGCcgucccauuGCGGCAgcgcaaucaucgCgUCGCGCCa -3'
miRNA:   3'- -UGCu-UGCACG---------CGCCGUa-----------GgAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 10271 0.68 0.464627
Target:  5'- ---cACGUuaCGCGGCAUCUuagCACGCCc -3'
miRNA:   3'- ugcuUGCAc-GCGCCGUAGGa--GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 10783 0.68 0.484734
Target:  5'- gGCGAGCGccggaaUGU-CGGCGccguUCgUCACGCCg -3'
miRNA:   3'- -UGCUUGC------ACGcGCCGU----AGgAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 10857 0.67 0.55802
Target:  5'- -aGAACGccgGCGCGacaGUCaCUUGCGCCg -3'
miRNA:   3'- ugCUUGCa--CGCGCcg-UAG-GAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 11186 0.68 0.483719
Target:  5'- cGCGcACGUgauucggGCGCGGC-UCCUUgccgGCGCUc -3'
miRNA:   3'- -UGCuUGCA-------CGCGCCGuAGGAG----UGCGG- -5'
26029 3' -56.9 NC_005342.2 + 11310 0.69 0.444963
Target:  5'- cGCGAugaagGCG-GCGCGGUucGUCgUCACcuuGCCg -3'
miRNA:   3'- -UGCU-----UGCaCGCGCCG--UAGgAGUG---CGG- -5'
26029 3' -56.9 NC_005342.2 + 11689 0.69 0.397937
Target:  5'- gGCG-GCGUGC-UGGCGUCCU-GCGCg -3'
miRNA:   3'- -UGCuUGCACGcGCCGUAGGAgUGCGg -5'
26029 3' -56.9 NC_005342.2 + 12268 0.77 0.131756
Target:  5'- gGCG-GCGcGCauuGCGGCGUCCUgCGCGCCa -3'
miRNA:   3'- -UGCuUGCaCG---CGCCGUAGGA-GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 13170 0.68 0.494943
Target:  5'- uACGAuCGUGUGCaGGCG-CgUCGCGUg -3'
miRNA:   3'- -UGCUuGCACGCG-CCGUaGgAGUGCGg -5'
26029 3' -56.9 NC_005342.2 + 13686 0.67 0.515644
Target:  5'- gACGAACGauaGCGCGucCAUgCUCGUGCCg -3'
miRNA:   3'- -UGCUUGCa--CGCGCc-GUAgGAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 13875 0.71 0.306393
Target:  5'- cACGGGC-UGCGCGGCggCCgUCGCGaUCg -3'
miRNA:   3'- -UGCUUGcACGCGCCGuaGG-AGUGC-GG- -5'
26029 3' -56.9 NC_005342.2 + 14206 0.75 0.177942
Target:  5'- uGCGAcgGCGUGCGCGcGCG-CCUCuuucgaGCCg -3'
miRNA:   3'- -UGCU--UGCACGCGC-CGUaGGAGug----CGG- -5'
26029 3' -56.9 NC_005342.2 + 14359 0.73 0.234287
Target:  5'- gGCGAucGCcUGCGCGGUcgCCaugaaggcgaguuucUCGCGCCg -3'
miRNA:   3'- -UGCU--UGcACGCGCCGuaGG---------------AGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 14893 0.7 0.36269
Target:  5'- cACG-ACG-GCGCGcCGUUCUCGCGCa -3'
miRNA:   3'- -UGCuUGCaCGCGCcGUAGGAGUGCGg -5'
26029 3' -56.9 NC_005342.2 + 16507 0.81 0.07082
Target:  5'- cGCGAGCGgugGCGCaacugcccGGCGUCCgUCACGCUg -3'
miRNA:   3'- -UGCUUGCa--CGCG--------CCGUAGG-AGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.