miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26029 3' -56.9 NC_005342.2 + 34 0.75 0.187752
Target:  5'- aGCGucACGUGCGCGu--UUCUCGCGCCu -3'
miRNA:   3'- -UGCu-UGCACGCGCcguAGGAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 193 0.69 0.425774
Target:  5'- uGCGccauaAAUGUGCGUcgGGUcgCCcCACGCCg -3'
miRNA:   3'- -UGC-----UUGCACGCG--CCGuaGGaGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 403 0.66 0.611145
Target:  5'- gACaGGC-UGCGCGGCAgugcggaacgcaaUCUUCACGgCg -3'
miRNA:   3'- -UGcUUGcACGCGCCGU-------------AGGAGUGCgG- -5'
26029 3' -56.9 NC_005342.2 + 770 0.67 0.547321
Target:  5'- uUGAGCGUGC-CGGUcgCCg-GCGCa -3'
miRNA:   3'- uGCUUGCACGcGCCGuaGGagUGCGg -5'
26029 3' -56.9 NC_005342.2 + 790 0.71 0.345897
Target:  5'- cGCGAGCGgcgacguaGCuGCGGUcgCCUgCGCGUCg -3'
miRNA:   3'- -UGCUUGCa-------CG-CGCCGuaGGA-GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 1462 0.71 0.306393
Target:  5'- uUGGACGUgccgagcaGCGCGGCGgacaCUUCgACGCCg -3'
miRNA:   3'- uGCUUGCA--------CGCGCCGUa---GGAG-UGCGG- -5'
26029 3' -56.9 NC_005342.2 + 1820 0.69 0.435307
Target:  5'- -aGAGCGUGCaggcCGGCGUCgUgcgguucuggCGCGCCu -3'
miRNA:   3'- ugCUUGCACGc---GCCGUAGgA----------GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 2400 0.66 0.579587
Target:  5'- aGCGGcaACGUgccuugguacgGCGCGGCGaacaCUUgCGCGCCa -3'
miRNA:   3'- -UGCU--UGCA-----------CGCGCCGUa---GGA-GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 3179 0.69 0.416366
Target:  5'- cCGGGCGcggccGCGCGGUGUUCagcgucugCGCGCCg -3'
miRNA:   3'- uGCUUGCa----CGCGCCGUAGGa-------GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 3284 0.67 0.551593
Target:  5'- cGCcGACGUGCGCGcGCAggauagcugccgacuUCUUCgGCGCg -3'
miRNA:   3'- -UGcUUGCACGCGC-CGU---------------AGGAG-UGCGg -5'
26029 3' -56.9 NC_005342.2 + 3436 0.72 0.277347
Target:  5'- cCGAGCGU-CGCGGCGuauuccuugaUCUUCGCGaCCu -3'
miRNA:   3'- uGCUUGCAcGCGCCGU----------AGGAGUGC-GG- -5'
26029 3' -56.9 NC_005342.2 + 3632 0.67 0.547321
Target:  5'- cGCGcGGCG-GCaGCGGCAcggugcucUCCcaCACGCCg -3'
miRNA:   3'- -UGC-UUGCaCG-CGCCGU--------AGGa-GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 4150 0.68 0.474627
Target:  5'- cGCGcuCGUGCugcaGCGGCGUgugCUUCuGCGCCu -3'
miRNA:   3'- -UGCuuGCACG----CGCCGUA---GGAG-UGCGG- -5'
26029 3' -56.9 NC_005342.2 + 4699 0.68 0.494943
Target:  5'- uGCGAucagGCGCGGuCAUCgUCgagauACGCCa -3'
miRNA:   3'- -UGCUugcaCGCGCC-GUAGgAG-----UGCGG- -5'
26029 3' -56.9 NC_005342.2 + 4799 0.66 0.601325
Target:  5'- aGCGcGCGaUGCGC-GCGUCCgUCA-GCCc -3'
miRNA:   3'- -UGCuUGC-ACGCGcCGUAGG-AGUgCGG- -5'
26029 3' -56.9 NC_005342.2 + 4880 0.66 0.623167
Target:  5'- uGCGAuaGUGCGCcGUcgCCauccaaaacaUCGCGCCg -3'
miRNA:   3'- -UGCUugCACGCGcCGuaGG----------AGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 7210 0.69 0.435307
Target:  5'- gACGAuCGUGCGCGcCGUCUUCAUaUCg -3'
miRNA:   3'- -UGCUuGCACGCGCcGUAGGAGUGcGG- -5'
26029 3' -56.9 NC_005342.2 + 8187 0.72 0.277347
Target:  5'- uUGAACGcUGCGUGGCAggaUgACGCCg -3'
miRNA:   3'- uGCUUGC-ACGCGCCGUaggAgUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 8459 0.66 0.590438
Target:  5'- cGCGAGCG-GCGuCGGUcggaucGUCCacugCAgGCCc -3'
miRNA:   3'- -UGCUUGCaCGC-GCCG------UAGGa---GUgCGG- -5'
26029 3' -56.9 NC_005342.2 + 8741 0.66 0.601325
Target:  5'- cCGAuCG-GCGUGuCGUCCgUUACGCCg -3'
miRNA:   3'- uGCUuGCaCGCGCcGUAGG-AGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.