miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26029 3' -56.9 NC_005342.2 + 16507 0.81 0.07082
Target:  5'- cGCGAGCGgugGCGCaacugcccGGCGUCCgUCACGCUg -3'
miRNA:   3'- -UGCUUGCa--CGCG--------CCGUAGG-AGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 17124 0.71 0.337712
Target:  5'- cGCGAGgaaguCGUGCGCgucgauauGGCGgccaaCUUCGCGCCg -3'
miRNA:   3'- -UGCUU-----GCACGCG--------CCGUa----GGAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 17280 0.7 0.36269
Target:  5'- gUGAACGccggccgGCGCaGCGUCCUCgacAUGCCc -3'
miRNA:   3'- uGCUUGCa------CGCGcCGUAGGAG---UGCGG- -5'
26029 3' -56.9 NC_005342.2 + 46641 0.66 0.623167
Target:  5'- cGCGAGCGccGCGaaGCAUCg-CGCGCa -3'
miRNA:   3'- -UGCUUGCa-CGCgcCGUAGgaGUGCGg -5'
26029 3' -56.9 NC_005342.2 + 37079 0.76 0.155386
Target:  5'- cGCGAcgugcaccGCGUcGCGCGGcCGUCCUCAuCGUCc -3'
miRNA:   3'- -UGCU--------UGCA-CGCGCC-GUAGGAGU-GCGG- -5'
26029 3' -56.9 NC_005342.2 + 46541 0.76 0.161427
Target:  5'- cACGAACGUGCuCGGCAUCgaacggcacaagcugCUCaucgACGCCg -3'
miRNA:   3'- -UGCUUGCACGcGCCGUAG---------------GAG----UGCGG- -5'
26029 3' -56.9 NC_005342.2 + 8955 0.75 0.192833
Target:  5'- uGCGGcCGUGCGCGGCGgcgaCCgaCGCGCg -3'
miRNA:   3'- -UGCUuGCACGCGCCGUa---GGa-GUGCGg -5'
26029 3' -56.9 NC_005342.2 + 26477 0.74 0.198035
Target:  5'- gUGAAUGUGCGUcGCGUgCCgCACGCCa -3'
miRNA:   3'- uGCUUGCACGCGcCGUA-GGaGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 14359 0.73 0.234287
Target:  5'- gGCGAucGCcUGCGCGGUcgCCaugaaggcgaguuucUCGCGCCg -3'
miRNA:   3'- -UGCU--UGcACGCGCCGuaGG---------------AGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 18508 0.71 0.329668
Target:  5'- gACGGACGcUGCaGCGGC--CUUCGCaGCCg -3'
miRNA:   3'- -UGCUUGC-ACG-CGCCGuaGGAGUG-CGG- -5'
26029 3' -56.9 NC_005342.2 + 13875 0.71 0.306393
Target:  5'- cACGGGC-UGCGCGGCggCCgUCGCGaUCg -3'
miRNA:   3'- -UGCUUGcACGCGCCGuaGG-AGUGC-GG- -5'
26029 3' -56.9 NC_005342.2 + 33114 0.74 0.208806
Target:  5'- gGCGAugccuGCG-GCGCGGCGaCUgCGCGCCg -3'
miRNA:   3'- -UGCU-----UGCaCGCGCCGUaGGaGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 18310 0.8 0.079399
Target:  5'- cACGcGCGUGCGCacgAUCCUCACGCCg -3'
miRNA:   3'- -UGCuUGCACGCGccgUAGGAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 18190 0.71 0.314009
Target:  5'- uGCGcuCGUcgugcGCGCGGCAUCgCaauaCGCGCCg -3'
miRNA:   3'- -UGCuuGCA-----CGCGCCGUAG-Ga---GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 29613 0.8 0.084054
Target:  5'- cGCGAuCGggccacGCGCGGCGUCCUCG-GCCg -3'
miRNA:   3'- -UGCUuGCa-----CGCGCCGUAGGAGUgCGG- -5'
26029 3' -56.9 NC_005342.2 + 32247 0.74 0.208806
Target:  5'- uGCcGACGUcGCGCGGCG-CgCUCGCGUCg -3'
miRNA:   3'- -UGcUUGCA-CGCGCCGUaG-GAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 35790 0.71 0.321768
Target:  5'- gACGAGCuggcccGUGaCGCGGCG-CUgCGCGCCa -3'
miRNA:   3'- -UGCUUG------CAC-GCGCCGUaGGaGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 36861 0.7 0.350875
Target:  5'- cACGAcGCGaucacGUGCGGCAUCCcgcagcgcggcgaCACGCCg -3'
miRNA:   3'- -UGCU-UGCa----CGCGCCGUAGGa------------GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 12268 0.77 0.131756
Target:  5'- gGCG-GCGcGCauuGCGGCGUCCUgCGCGCCa -3'
miRNA:   3'- -UGCuUGCaCG---CGCCGUAGGA-GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 14206 0.75 0.177942
Target:  5'- uGCGAcgGCGUGCGCGcGCG-CCUCuuucgaGCCg -3'
miRNA:   3'- -UGCU--UGCACGCGC-CGUaGGAGug----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.