miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26029 3' -56.9 NC_005342.2 + 43731 1.12 0.000392
Target:  5'- cACGAACGUGCGCGGCAUCCUCACGCCg -3'
miRNA:   3'- -UGCUUGCACGCGCCGUAGGAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 34224 0.89 0.018533
Target:  5'- cGCGAGCGgcGCGCGGCGUCCUaCGCGCUc -3'
miRNA:   3'- -UGCUUGCa-CGCGCCGUAGGA-GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 16507 0.81 0.07082
Target:  5'- cGCGAGCGgugGCGCaacugcccGGCGUCCgUCACGCUg -3'
miRNA:   3'- -UGCUUGCa--CGCG--------CCGUAGG-AGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 18310 0.8 0.079399
Target:  5'- cACGcGCGUGCGCacgAUCCUCACGCCg -3'
miRNA:   3'- -UGCuUGCACGCGccgUAGGAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 29613 0.8 0.084054
Target:  5'- cGCGAuCGggccacGCGCGGCGUCCUCG-GCCg -3'
miRNA:   3'- -UGCUuGCa-----CGCGCCGUAGGAGUgCGG- -5'
26029 3' -56.9 NC_005342.2 + 20197 0.78 0.121225
Target:  5'- gACGAACGUGCGCcugacgggcucGGCggCCgaccagauUCGCGCCg -3'
miRNA:   3'- -UGCUUGCACGCG-----------CCGuaGG--------AGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 12268 0.77 0.131756
Target:  5'- gGCG-GCGcGCauuGCGGCGUCCUgCGCGCCa -3'
miRNA:   3'- -UGCuUGCaCG---CGCCGUAGGA-GUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 22835 0.76 0.147111
Target:  5'- cGCGAACGUGCGC-GCcgCCgugCuCGCCg -3'
miRNA:   3'- -UGCUUGCACGCGcCGuaGGa--GuGCGG- -5'
26029 3' -56.9 NC_005342.2 + 37079 0.76 0.155386
Target:  5'- cGCGAcgugcaccGCGUcGCGCGGcCGUCCUCAuCGUCc -3'
miRNA:   3'- -UGCU--------UGCA-CGCGCC-GUAGGAGU-GCGG- -5'
26029 3' -56.9 NC_005342.2 + 19190 0.76 0.15968
Target:  5'- cGCGAuCGUGgGCGGCGcagUgCUCGCGCUc -3'
miRNA:   3'- -UGCUuGCACgCGCCGU---AgGAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 46541 0.76 0.161427
Target:  5'- cACGAACGUGCuCGGCAUCgaacggcacaagcugCUCaucgACGCCg -3'
miRNA:   3'- -UGCUUGCACGcGCCGUAG---------------GAG----UGCGG- -5'
26029 3' -56.9 NC_005342.2 + 14206 0.75 0.177942
Target:  5'- uGCGAcgGCGUGCGCGcGCG-CCUCuuucgaGCCg -3'
miRNA:   3'- -UGCU--UGCACGCGC-CGUaGGAGug----CGG- -5'
26029 3' -56.9 NC_005342.2 + 34 0.75 0.187752
Target:  5'- aGCGucACGUGCGCGu--UUCUCGCGCCu -3'
miRNA:   3'- -UGCu-UGCACGCGCcguAGGAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 8955 0.75 0.192833
Target:  5'- uGCGGcCGUGCGCGGCGgcgaCCgaCGCGCg -3'
miRNA:   3'- -UGCUuGCACGCGCCGUa---GGa-GUGCGg -5'
26029 3' -56.9 NC_005342.2 + 26477 0.74 0.198035
Target:  5'- gUGAAUGUGCGUcGCGUgCCgCACGCCa -3'
miRNA:   3'- uGCUUGCACGCGcCGUA-GGaGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 33548 0.74 0.198035
Target:  5'- gACGAGCGUGUGUGGCugAUCgaCugGCg -3'
miRNA:   3'- -UGCUUGCACGCGCCG--UAGgaGugCGg -5'
26029 3' -56.9 NC_005342.2 + 32247 0.74 0.208806
Target:  5'- uGCcGACGUcGCGCGGCG-CgCUCGCGUCg -3'
miRNA:   3'- -UGcUUGCA-CGCGCCGUaG-GAGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 33114 0.74 0.208806
Target:  5'- gGCGAugccuGCG-GCGCGGCGaCUgCGCGCCg -3'
miRNA:   3'- -UGCU-----UGCaCGCGCCGUaGGaGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 14359 0.73 0.234287
Target:  5'- gGCGAucGCcUGCGCGGUcgCCaugaaggcgaguuucUCGCGCCg -3'
miRNA:   3'- -UGCU--UGcACGCGCCGuaGG---------------AGUGCGG- -5'
26029 3' -56.9 NC_005342.2 + 32168 0.73 0.244182
Target:  5'- -gGAACGUGCGCaGGCGUCggCGCGaUCg -3'
miRNA:   3'- ugCUUGCACGCG-CCGUAGgaGUGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.