Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26029 | 5' | -52.6 | NC_005342.2 | + | 9159 | 0.69 | 0.600604 |
Target: 5'- aCGAGUGcCGACGCaCGGCgcaCGAGUCg -3' miRNA: 3'- -GCUCGCaGUUGCGcGUCGac-GUUUAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 791 | 0.69 | 0.589219 |
Target: 5'- gCGAGCG---GCGaCGUAGCUGC-GGUCg -3' miRNA: 3'- -GCUCGCaguUGC-GCGUCGACGuUUAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 22898 | 0.7 | 0.566573 |
Target: 5'- aCGAGCagaAGCGCGguGCUGCcgcUCg -3' miRNA: 3'- -GCUCGcagUUGCGCguCGACGuuuAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 19354 | 0.7 | 0.559821 |
Target: 5'- cCGAGCG-CGAcCGUGCGGCacgagcgcucgagcgUGCAGGUUa -3' miRNA: 3'- -GCUCGCaGUU-GCGCGUCG---------------ACGUUUAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 32626 | 0.7 | 0.555332 |
Target: 5'- -cGGCGuUCAGCGCGCGcGuCUGCGccgaGAUCg -3' miRNA: 3'- gcUCGC-AGUUGCGCGU-C-GACGU----UUAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 25830 | 0.7 | 0.555332 |
Target: 5'- gGAGgGUCAgggGCGCGUcaGGCggucgaUGCGAAUCu -3' miRNA: 3'- gCUCgCAGU---UGCGCG--UCG------ACGUUUAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 21116 | 0.7 | 0.551972 |
Target: 5'- cCGAGCG-CGACGCGaCAgcacucgcuacgacGCUGCAGGc- -3' miRNA: 3'- -GCUCGCaGUUGCGC-GU--------------CGACGUUUag -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 3037 | 0.71 | 0.522037 |
Target: 5'- cCGGGCuUCGugGCGCGgaacagcugccGCUGCGcAUCa -3' miRNA: 3'- -GCUCGcAGUugCGCGU-----------CGACGUuUAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 11947 | 0.71 | 0.52094 |
Target: 5'- uCGGGCGgcgcguaucgCAugGCGCAggacucgcgugucGCUGCAuGUCg -3' miRNA: 3'- -GCUCGCa---------GUugCGCGU-------------CGACGUuUAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 29059 | 0.71 | 0.511108 |
Target: 5'- aGGGUGUacCAGcCGCGCGGCUGCu---- -3' miRNA: 3'- gCUCGCA--GUU-GCGCGUCGACGuuuag -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 32021 | 0.71 | 0.504596 |
Target: 5'- aCGuGCGUCAgcaggucggucacgaGCGCGUgcacGGCUGcCGGGUCg -3' miRNA: 3'- -GCuCGCAGU---------------UGCGCG----UCGAC-GUUUAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 16870 | 0.71 | 0.489544 |
Target: 5'- uGAGaCGa-AACGCGCGGCUGC--GUCg -3' miRNA: 3'- gCUC-GCagUUGCGCGUCGACGuuUAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 36993 | 0.71 | 0.489544 |
Target: 5'- -aAGCGgcUUAACGUGCAGCgGCAGGUUc -3' miRNA: 3'- gcUCGC--AGUUGCGCGUCGaCGUUUAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 46642 | 0.72 | 0.468414 |
Target: 5'- gCGAGCGcCGcgaagcaucGCGCGCAGCcaagGCGGcgCg -3' miRNA: 3'- -GCUCGCaGU---------UGCGCGUCGa---CGUUuaG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 28497 | 0.72 | 0.468414 |
Target: 5'- gCGGGuCG-CGGCgGCGCGGCUGCccAUCa -3' miRNA: 3'- -GCUC-GCaGUUG-CGCGUCGACGuuUAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 38815 | 0.72 | 0.447763 |
Target: 5'- aCGAaCGcaAGCGCGCAGCUGC-GGUCg -3' miRNA: 3'- -GCUcGCagUUGCGCGUCGACGuUUAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 26653 | 0.72 | 0.437629 |
Target: 5'- uGAGCGUgAuCGCGcCGGCUGCcGAUa -3' miRNA: 3'- gCUCGCAgUuGCGC-GUCGACGuUUAg -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 28460 | 0.73 | 0.408037 |
Target: 5'- aCGAGCGccgcCAGCGCGCcAGC-GCcGAUCg -3' miRNA: 3'- -GCUCGCa---GUUGCGCG-UCGaCGuUUAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 3233 | 0.73 | 0.408037 |
Target: 5'- uCGAGCGgccggaCAGCGCGCcGUgGUAGAUCg -3' miRNA: 3'- -GCUCGCa-----GUUGCGCGuCGaCGUUUAG- -5' |
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26029 | 5' | -52.6 | NC_005342.2 | + | 2243 | 0.73 | 0.379728 |
Target: 5'- uGAGCG-CAGCGCGUucGCcgucgGCAGGUCg -3' miRNA: 3'- gCUCGCaGUUGCGCGu-CGa----CGUUUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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