miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26029 5' -52.6 NC_005342.2 + 14001 0.66 0.767513
Target:  5'- uGGGCGUCAaguGCGaccgGCGGCgacaaugUGCGAAUUc -3'
miRNA:   3'- gCUCGCAGU---UGCg---CGUCG-------ACGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 16550 0.66 0.813275
Target:  5'- uCGAGCGUCGACGgucuauccaacacgGCGGaUGCGAAg- -3'
miRNA:   3'- -GCUCGCAGUUGCg-------------CGUCgACGUUUag -5'
26029 5' -52.6 NC_005342.2 + 16870 0.71 0.489544
Target:  5'- uGAGaCGa-AACGCGCGGCUGC--GUCg -3'
miRNA:   3'- gCUC-GCagUUGCGCGUCGACGuuUAG- -5'
26029 5' -52.6 NC_005342.2 + 16942 0.66 0.799433
Target:  5'- -cGGCGUCGGCGCaGguGCgGCcGGUUc -3'
miRNA:   3'- gcUCGCAGUUGCG-CguCGaCGuUUAG- -5'
26029 5' -52.6 NC_005342.2 + 17335 0.74 0.344084
Target:  5'- gCGAGCGUCGACGCGCucgacGCguuCAAccaGUCg -3'
miRNA:   3'- -GCUCGCAGUUGCGCGu----CGac-GUU---UAG- -5'
26029 5' -52.6 NC_005342.2 + 18545 0.73 0.370589
Target:  5'- cCGGGUGcggCAGCcgGCGCGGCgGCGAAUCc -3'
miRNA:   3'- -GCUCGCa--GUUG--CGCGUCGaCGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 19302 0.69 0.612019
Target:  5'- gCGuGCcUCGGCGCGCcGCUGCGc--- -3'
miRNA:   3'- -GCuCGcAGUUGCGCGuCGACGUuuag -5'
26029 5' -52.6 NC_005342.2 + 19354 0.7 0.559821
Target:  5'- cCGAGCG-CGAcCGUGCGGCacgagcgcucgagcgUGCAGGUUa -3'
miRNA:   3'- -GCUCGCaGUU-GCGCGUCG---------------ACGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 20638 0.67 0.725349
Target:  5'- gCGAGCGUCGcaACgGCGCuGCgccagugGCAGGa- -3'
miRNA:   3'- -GCUCGCAGU--UG-CGCGuCGa------CGUUUag -5'
26029 5' -52.6 NC_005342.2 + 20714 0.73 0.379728
Target:  5'- aCGAgGCGUCGGCGCagGCAgacGCUGCG-AUCa -3'
miRNA:   3'- -GCU-CGCAGUUGCG--CGU---CGACGUuUAG- -5'
26029 5' -52.6 NC_005342.2 + 20955 0.74 0.344084
Target:  5'- gGGGCGgacgCAaacGCGCGCGGCgcggGCGAGUg -3'
miRNA:   3'- gCUCGCa---GU---UGCGCGUCGa---CGUUUAg -5'
26029 5' -52.6 NC_005342.2 + 21116 0.7 0.551972
Target:  5'- cCGAGCG-CGACGCGaCAgcacucgcuacgacGCUGCAGGc- -3'
miRNA:   3'- -GCUCGCaGUUGCGC-GU--------------CGACGUUUag -5'
26029 5' -52.6 NC_005342.2 + 22002 0.67 0.725349
Target:  5'- uCGGcGCGaaUCAGCGCGCGgGCguuuucucgacGCAGAUCa -3'
miRNA:   3'- -GCU-CGC--AGUUGCGCGU-CGa----------CGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 22898 0.7 0.566573
Target:  5'- aCGAGCagaAGCGCGguGCUGCcgcUCg -3'
miRNA:   3'- -GCUCGcagUUGCGCguCGACGuuuAG- -5'
26029 5' -52.6 NC_005342.2 + 24434 0.67 0.723139
Target:  5'- -cGGCGgcuacccgaaaGGCGCGguGCUGCAAAg- -3'
miRNA:   3'- gcUCGCag---------UUGCGCguCGACGUUUag -5'
26029 5' -52.6 NC_005342.2 + 25052 0.69 0.612019
Target:  5'- uCGAGCGgcagCAcCGCGCuuCUGCucGUCa -3'
miRNA:   3'- -GCUCGCa---GUuGCGCGucGACGuuUAG- -5'
26029 5' -52.6 NC_005342.2 + 25516 0.66 0.799433
Target:  5'- cCGAgcGCGUCcugguACGCGCcGCUcgaugucaGCGGGUCg -3'
miRNA:   3'- -GCU--CGCAGu----UGCGCGuCGA--------CGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 25830 0.7 0.555332
Target:  5'- gGAGgGUCAgggGCGCGUcaGGCggucgaUGCGAAUCu -3'
miRNA:   3'- gCUCgCAGU---UGCGCG--UCG------ACGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 26653 0.72 0.437629
Target:  5'- uGAGCGUgAuCGCGcCGGCUGCcGAUa -3'
miRNA:   3'- gCUCGCAgUuGCGC-GUCGACGuUUAg -5'
26029 5' -52.6 NC_005342.2 + 27184 0.67 0.7407
Target:  5'- gGAGCGcaggcgugucgacguUCAgGCGCGCAGCcGC--GUCg -3'
miRNA:   3'- gCUCGC---------------AGU-UGCGCGUCGaCGuuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.