miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26029 5' -52.6 NC_005342.2 + 791 0.69 0.589219
Target:  5'- gCGAGCG---GCGaCGUAGCUGC-GGUCg -3'
miRNA:   3'- -GCUCGCaguUGC-GCGUCGACGuUUAG- -5'
26029 5' -52.6 NC_005342.2 + 833 0.69 0.622309
Target:  5'- gCGGGUGUUucgacgacuGGCGCGCuggcggcAGCUGCAGccuuGUCg -3'
miRNA:   3'- -GCUCGCAG---------UUGCGCG-------UCGACGUU----UAG- -5'
26029 5' -52.6 NC_005342.2 + 2243 0.73 0.379728
Target:  5'- uGAGCG-CAGCGCGUucGCcgucgGCAGGUCg -3'
miRNA:   3'- gCUCGCaGUUGCGCGu-CGa----CGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 2320 0.68 0.691835
Target:  5'- cCGuGCGgccguUGCGCAGCUGgAAGUUg -3'
miRNA:   3'- -GCuCGCaguu-GCGCGUCGACgUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 3037 0.71 0.522037
Target:  5'- cCGGGCuUCGugGCGCGgaacagcugccGCUGCGcAUCa -3'
miRNA:   3'- -GCUCGcAGUugCGCGU-----------CGACGUuUAG- -5'
26029 5' -52.6 NC_005342.2 + 3233 0.73 0.408037
Target:  5'- uCGAGCGgccggaCAGCGCGCcGUgGUAGAUCg -3'
miRNA:   3'- -GCUCGCa-----GUUGCGCGuCGaCGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 3514 0.66 0.80936
Target:  5'- -aAGCGggaUCAACGCGguGCcgcGCAGcgCg -3'
miRNA:   3'- gcUCGC---AGUUGCGCguCGa--CGUUuaG- -5'
26029 5' -52.6 NC_005342.2 + 3662 0.8 0.148526
Target:  5'- uGAGcCGUC-GCGuCGUAGCUGCGGAUCg -3'
miRNA:   3'- gCUC-GCAGuUGC-GCGUCGACGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 4529 0.66 0.789317
Target:  5'- gCGAcGCGUCAGgugccaaccCGCGCAGUguuUGCAc--- -3'
miRNA:   3'- -GCU-CGCAGUU---------GCGCGUCG---ACGUuuag -5'
26029 5' -52.6 NC_005342.2 + 4830 0.79 0.161812
Target:  5'- cCGAGCGUCugccuGCGCggGCGGCUGCGGGa- -3'
miRNA:   3'- -GCUCGCAGu----UGCG--CGUCGACGUUUag -5'
26029 5' -52.6 NC_005342.2 + 6109 0.66 0.789317
Target:  5'- uGAGCGUCAuguCGUGCAcCgGCAAc-- -3'
miRNA:   3'- gCUCGCAGUu--GCGCGUcGaCGUUuag -5'
26029 5' -52.6 NC_005342.2 + 8889 0.67 0.736336
Target:  5'- -uGGCGUCGAUGCGCGacGCgGCu--UCg -3'
miRNA:   3'- gcUCGCAGUUGCGCGU--CGaCGuuuAG- -5'
26029 5' -52.6 NC_005342.2 + 8906 0.67 0.714261
Target:  5'- gCGGuGCGUCGuagaaGCGCGCcGCcgccgaGCGAAUCg -3'
miRNA:   3'- -GCU-CGCAGU-----UGCGCGuCGa-----CGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 9159 0.69 0.600604
Target:  5'- aCGAGUGcCGACGCaCGGCgcaCGAGUCg -3'
miRNA:   3'- -GCUCGCaGUUGCGcGUCGac-GUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 9326 0.66 0.799433
Target:  5'- --cGuCGUCGGCGCGCGGCgucggGCcu-UCu -3'
miRNA:   3'- gcuC-GCAGUUGCGCGUCGa----CGuuuAG- -5'
26029 5' -52.6 NC_005342.2 + 9633 0.68 0.703085
Target:  5'- aCGGGCaG-CGGCGCGCccGGCUGUAGc-- -3'
miRNA:   3'- -GCUCG-CaGUUGCGCG--UCGACGUUuag -5'
26029 5' -52.6 NC_005342.2 + 9904 0.68 0.680523
Target:  5'- aCGAGCagGUCGcCGCGCAGgUGUuugccGUCg -3'
miRNA:   3'- -GCUCG--CAGUuGCGCGUCgACGuu---UAG- -5'
26029 5' -52.6 NC_005342.2 + 10187 0.69 0.612019
Target:  5'- gCGGcCGUCGgcaucaaagcuGCGCGCGGuCUGCuuGUCg -3'
miRNA:   3'- -GCUcGCAGU-----------UGCGCGUC-GACGuuUAG- -5'
26029 5' -52.6 NC_005342.2 + 11947 0.71 0.52094
Target:  5'- uCGGGCGgcgcguaucgCAugGCGCAggacucgcgugucGCUGCAuGUCg -3'
miRNA:   3'- -GCUCGCa---------GUugCGCGU-------------CGACGUuUAG- -5'
26029 5' -52.6 NC_005342.2 + 11947 0.68 0.703085
Target:  5'- aCGcAGCGUCGACGauCGCGGCcGU--AUCg -3'
miRNA:   3'- -GC-UCGCAGUUGC--GCGUCGaCGuuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.