miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26029 5' -52.6 NC_005342.2 + 43765 1.09 0.001377
Target:  5'- uCGAGCGUCAACGCGCAGCUGCAAAUCc -3'
miRNA:   3'- -GCUCGCAGUUGCGCGUCGACGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 45022 0.9 0.032372
Target:  5'- aCGGGCGUCAcgcuCGCGCAGCUGCAGGg- -3'
miRNA:   3'- -GCUCGCAGUu---GCGCGUCGACGUUUag -5'
26029 5' -52.6 NC_005342.2 + 3662 0.8 0.148526
Target:  5'- uGAGcCGUC-GCGuCGUAGCUGCGGAUCg -3'
miRNA:   3'- gCUC-GCAGuUGC-GCGUCGACGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 4830 0.79 0.161812
Target:  5'- cCGAGCGUCugccuGCGCggGCGGCUGCGGGa- -3'
miRNA:   3'- -GCUCGCAGu----UGCG--CGUCGACGUUUag -5'
26029 5' -52.6 NC_005342.2 + 46060 0.74 0.344084
Target:  5'- gCGGGCGcCGuuAUGCGCcGCUGCGGAUUu -3'
miRNA:   3'- -GCUCGCaGU--UGCGCGuCGACGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 20955 0.74 0.344084
Target:  5'- gGGGCGgacgCAaacGCGCGCGGCgcggGCGAGUg -3'
miRNA:   3'- gCUCGCa---GU---UGCGCGUCGa---CGUUUAg -5'
26029 5' -52.6 NC_005342.2 + 17335 0.74 0.344084
Target:  5'- gCGAGCGUCGACGCGCucgacGCguuCAAccaGUCg -3'
miRNA:   3'- -GCUCGCAGUUGCGCGu----CGac-GUU---UAG- -5'
26029 5' -52.6 NC_005342.2 + 18545 0.73 0.370589
Target:  5'- cCGGGUGcggCAGCcgGCGCGGCgGCGAAUCc -3'
miRNA:   3'- -GCUCGCa--GUUG--CGCGUCGaCGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 2243 0.73 0.379728
Target:  5'- uGAGCG-CAGCGCGUucGCcgucgGCAGGUCg -3'
miRNA:   3'- gCUCGCaGUUGCGCGu-CGa----CGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 20714 0.73 0.379728
Target:  5'- aCGAgGCGUCGGCGCagGCAgacGCUGCG-AUCa -3'
miRNA:   3'- -GCU-CGCAGUUGCG--CGU---CGACGUuUAG- -5'
26029 5' -52.6 NC_005342.2 + 28460 0.73 0.408037
Target:  5'- aCGAGCGccgcCAGCGCGCcAGC-GCcGAUCg -3'
miRNA:   3'- -GCUCGCa---GUUGCGCG-UCGaCGuUUAG- -5'
26029 5' -52.6 NC_005342.2 + 3233 0.73 0.408037
Target:  5'- uCGAGCGgccggaCAGCGCGCcGUgGUAGAUCg -3'
miRNA:   3'- -GCUCGCa-----GUUGCGCGuCGaCGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 26653 0.72 0.437629
Target:  5'- uGAGCGUgAuCGCGcCGGCUGCcGAUa -3'
miRNA:   3'- gCUCGCAgUuGCGC-GUCGACGuUUAg -5'
26029 5' -52.6 NC_005342.2 + 38815 0.72 0.447763
Target:  5'- aCGAaCGcaAGCGCGCAGCUGC-GGUCg -3'
miRNA:   3'- -GCUcGCagUUGCGCGUCGACGuUUAG- -5'
26029 5' -52.6 NC_005342.2 + 28497 0.72 0.468414
Target:  5'- gCGGGuCG-CGGCgGCGCGGCUGCccAUCa -3'
miRNA:   3'- -GCUC-GCaGUUG-CGCGUCGACGuuUAG- -5'
26029 5' -52.6 NC_005342.2 + 46642 0.72 0.468414
Target:  5'- gCGAGCGcCGcgaagcaucGCGCGCAGCcaagGCGGcgCg -3'
miRNA:   3'- -GCUCGCaGU---------UGCGCGUCGa---CGUUuaG- -5'
26029 5' -52.6 NC_005342.2 + 16870 0.71 0.489544
Target:  5'- uGAGaCGa-AACGCGCGGCUGC--GUCg -3'
miRNA:   3'- gCUC-GCagUUGCGCGUCGACGuuUAG- -5'
26029 5' -52.6 NC_005342.2 + 36993 0.71 0.489544
Target:  5'- -aAGCGgcUUAACGUGCAGCgGCAGGUUc -3'
miRNA:   3'- gcUCGC--AGUUGCGCGUCGaCGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 32021 0.71 0.504596
Target:  5'- aCGuGCGUCAgcaggucggucacgaGCGCGUgcacGGCUGcCGGGUCg -3'
miRNA:   3'- -GCuCGCAGU---------------UGCGCG----UCGAC-GUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 29059 0.71 0.511108
Target:  5'- aGGGUGUacCAGcCGCGCGGCUGCu---- -3'
miRNA:   3'- gCUCGCA--GUU-GCGCGUCGACGuuuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.