miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26031 5' -58.2 NC_005342.2 + 14628 0.68 0.414608
Target:  5'- -cGCUGAUGUUG--CGGCGCauuuCGCGCa -3'
miRNA:   3'- gaCGACUGCGACaaGUCGCG----GCGCGg -5'
26031 5' -58.2 NC_005342.2 + 4819 0.68 0.396216
Target:  5'- -gGCUGAC-CguacgCGcGCGCCGUGCCg -3'
miRNA:   3'- gaCGACUGcGacaa-GU-CGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 20531 0.68 0.396216
Target:  5'- -cGCUGGCGgcCUGUaaCAugGCCGCGCCg -3'
miRNA:   3'- gaCGACUGC--GACAa-GUcgCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 21138 0.68 0.396216
Target:  5'- -cGCUacGACGCUG--CAG-GCCGgGCCg -3'
miRNA:   3'- gaCGA--CUGCGACaaGUCgCGGCgCGG- -5'
26031 5' -58.2 NC_005342.2 + 16982 0.68 0.390802
Target:  5'- uUGCacUGACGaacaccgagaCGGCGCUGCGCCg -3'
miRNA:   3'- gACG--ACUGCgacaa-----GUCGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 44620 0.68 0.378358
Target:  5'- -aGCUGAUcgaGCUGcgUCucgauGCGUCGCGCg -3'
miRNA:   3'- gaCGACUG---CGACa-AGu----CGCGGCGCGg -5'
26031 5' -58.2 NC_005342.2 + 47234 0.68 0.378358
Target:  5'- aCUGCc-GCGCUGaacgaGGCGCCG-GCCg -3'
miRNA:   3'- -GACGacUGCGACaag--UCGCGGCgCGG- -5'
26031 5' -58.2 NC_005342.2 + 8897 0.68 0.378358
Target:  5'- aUGCgcGACGCggcuucGUUC-GCGCCgGCGCUg -3'
miRNA:   3'- gACGa-CUGCGa-----CAAGuCGCGG-CGCGG- -5'
26031 5' -58.2 NC_005342.2 + 1078 0.68 0.369634
Target:  5'- -gGCgcACGCUG--CGGCGgCGCGCCa -3'
miRNA:   3'- gaCGacUGCGACaaGUCGCgGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 14269 0.69 0.361049
Target:  5'- gUGCUucuucaGCaUGUcgaUCAGCGCgGCGCCg -3'
miRNA:   3'- gACGAcug---CG-ACA---AGUCGCGgCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 44095 0.69 0.361049
Target:  5'- -aGgUG-CGCUGcUCGGCGgCGCGCg -3'
miRNA:   3'- gaCgACuGCGACaAGUCGCgGCGCGg -5'
26031 5' -58.2 NC_005342.2 + 44747 0.69 0.339383
Target:  5'- gUGCaGAUGCUGccCGGCGUcaucggggcgggcggCGCGCCg -3'
miRNA:   3'- gACGaCUGCGACaaGUCGCG---------------GCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 8606 0.69 0.336135
Target:  5'- aUGCgcGACGUcgaGcUCGGCGCgGCGCCc -3'
miRNA:   3'- gACGa-CUGCGa--CaAGUCGCGgCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 13818 0.69 0.336135
Target:  5'- -gGCgacgGGCGCcGcgUCGagcgcauugagcGCGCCGCGCCg -3'
miRNA:   3'- gaCGa---CUGCGaCa-AGU------------CGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 47168 0.69 0.328114
Target:  5'- gUGCa---GCUGUUCGGUcCUGCGCCg -3'
miRNA:   3'- gACGacugCGACAAGUCGcGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 17169 0.69 0.32337
Target:  5'- cCUGCaGGCGCUcgcgucGUUCGGCGUgaacauucagcaggaUGUGCCg -3'
miRNA:   3'- -GACGaCUGCGA------CAAGUCGCG---------------GCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 16926 0.69 0.320235
Target:  5'- uUGCgGGCGCcGUgcUCGGCGUCgGCGCa -3'
miRNA:   3'- gACGaCUGCGaCA--AGUCGCGG-CGCGg -5'
26031 5' -58.2 NC_005342.2 + 19444 0.69 0.320235
Target:  5'- -cGCUGuACGUga-UgGGCaGCCGCGCCg -3'
miRNA:   3'- gaCGAC-UGCGacaAgUCG-CGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 35794 0.7 0.3125
Target:  5'- -aGCUGGC-CcGUgacgCGGCGCUGCGCg -3'
miRNA:   3'- gaCGACUGcGaCAa---GUCGCGGCGCGg -5'
26031 5' -58.2 NC_005342.2 + 19806 0.7 0.3125
Target:  5'- aUGCgcauCGCUGUcagccUCGGCGgCGCGCa -3'
miRNA:   3'- gACGacu-GCGACA-----AGUCGCgGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.