miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26032 3' -52.4 NC_005342.2 + 22904 0.66 0.834563
Target:  5'- aGAAGCGcGGUGcugccgcucgaGUUGUGCAGCGuAUa -3'
miRNA:   3'- gCUUCGCuUCAC-----------CGACGCGUUGCuUG- -5'
26032 3' -52.4 NC_005342.2 + 40118 0.66 0.819507
Target:  5'- uGggGCGAgcgcgagcuGGaaaUGGCcgGCGCAggccgcgucgaucugGCGAGCg -3'
miRNA:   3'- gCuuCGCU---------UC---ACCGa-CGCGU---------------UGCUUG- -5'
26032 3' -52.4 NC_005342.2 + 41100 0.66 0.815657
Target:  5'- uCGccGCGAuccgcucgaUGGCUGCGCAAUGcaguGCg -3'
miRNA:   3'- -GCuuCGCUuc-------ACCGACGCGUUGCu---UG- -5'
26032 3' -52.4 NC_005342.2 + 36406 0.66 0.815657
Target:  5'- uCGAcaaucAGCGcauGUGGCaaucgcgucUGCGCAacGCGGGCu -3'
miRNA:   3'- -GCU-----UCGCuu-CACCG---------ACGCGU--UGCUUG- -5'
26032 3' -52.4 NC_005342.2 + 21018 0.66 0.815657
Target:  5'- aCGGGcGaCGAAGUGGCcGCGCAgugcugcuccuGgGGACu -3'
miRNA:   3'- -GCUU-C-GCUUCACCGaCGCGU-----------UgCUUG- -5'
26032 3' -52.4 NC_005342.2 + 38771 0.67 0.775453
Target:  5'- gGAuGCGAAGUcGG-UGCGCAccGCGAu- -3'
miRNA:   3'- gCUuCGCUUCA-CCgACGCGU--UGCUug -5'
26032 3' -52.4 NC_005342.2 + 27548 0.67 0.764973
Target:  5'- cCGggGCGAAu---CUGCGCAuUGAACa -3'
miRNA:   3'- -GCuuCGCUUcaccGACGCGUuGCUUG- -5'
26032 3' -52.4 NC_005342.2 + 44818 0.67 0.762859
Target:  5'- gCGAGGCGAuacucgacgccUGuCUGCGCGGCGAucGCg -3'
miRNA:   3'- -GCUUCGCUuc---------ACcGACGCGUUGCU--UG- -5'
26032 3' -52.4 NC_005342.2 + 41391 0.67 0.754347
Target:  5'- gCGgcGCGccGUGGCgGCGauGCGGGCu -3'
miRNA:   3'- -GCuuCGCuuCACCGaCGCguUGCUUG- -5'
26032 3' -52.4 NC_005342.2 + 29549 0.67 0.732705
Target:  5'- cCGAucGCGAGGc-GUUGCGCuuCGGACg -3'
miRNA:   3'- -GCUu-CGCUUCacCGACGCGuuGCUUG- -5'
26032 3' -52.4 NC_005342.2 + 38397 0.68 0.699461
Target:  5'- cCGGcuGGCGcugaAGGUGGCg--GCAACGAACu -3'
miRNA:   3'- -GCU--UCGC----UUCACCGacgCGUUGCUUG- -5'
26032 3' -52.4 NC_005342.2 + 26068 0.68 0.688222
Target:  5'- aGAacGGCGcccaauuGG-GGCuaUGCGCAGCGAACc -3'
miRNA:   3'- gCU--UCGCu------UCaCCG--ACGCGUUGCUUG- -5'
26032 3' -52.4 NC_005342.2 + 47011 0.68 0.676926
Target:  5'- aGAAgGCGAAGUGcgcgcgaauGCUGCGCcGCaAGCa -3'
miRNA:   3'- gCUU-CGCUUCAC---------CGACGCGuUGcUUG- -5'
26032 3' -52.4 NC_005342.2 + 6275 0.69 0.665583
Target:  5'- aCGAGcGCGcuGGUgaaaGGCUGCGCAGCcgugaGGACg -3'
miRNA:   3'- -GCUU-CGCu-UCA----CCGACGCGUUG-----CUUG- -5'
26032 3' -52.4 NC_005342.2 + 41018 0.69 0.654208
Target:  5'- aCGAGGCcGAGcucgcccGGC-GCGCGAUGGACg -3'
miRNA:   3'- -GCUUCGcUUCa------CCGaCGCGUUGCUUG- -5'
26032 3' -52.4 NC_005342.2 + 29596 0.7 0.563332
Target:  5'- uCGucGGCGAAGc-GCUGCGCGAuCGGGCc -3'
miRNA:   3'- -GCu-UCGCUUCacCGACGCGUU-GCUUG- -5'
26032 3' -52.4 NC_005342.2 + 39191 0.7 0.563332
Target:  5'- -aAGGCGAAGaUGGaagcgcgcgGCGUAACGGACg -3'
miRNA:   3'- gcUUCGCUUC-ACCga-------CGCGUUGCUUG- -5'
26032 3' -52.4 NC_005342.2 + 8874 0.7 0.552142
Target:  5'- uGAucuuGGCGAGGuUGGCgucgaUGCGCGACGcGGCu -3'
miRNA:   3'- gCU----UCGCUUC-ACCG-----ACGCGUUGC-UUG- -5'
26032 3' -52.4 NC_005342.2 + 21221 0.72 0.490949
Target:  5'- aCGggGCGccgacgcaaugggucAAGUuccuGGCcgGCGCGGCGGGCa -3'
miRNA:   3'- -GCuuCGC---------------UUCA----CCGa-CGCGUUGCUUG- -5'
26032 3' -52.4 NC_005342.2 + 30558 0.73 0.42515
Target:  5'- ---cGCGucGUGGCcGCGCuguGCGAGCa -3'
miRNA:   3'- gcuuCGCuuCACCGaCGCGu--UGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.