miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26033 5' -62.5 NC_005342.2 + 18269 0.67 0.266661
Target:  5'- cGCUgGCGgCAgcgcGGCCG-CGCuCGGCaCGCg -3'
miRNA:   3'- -UGAgCGCgGU----UCGGCaGCG-GCCG-GUG- -5'
26033 5' -62.5 NC_005342.2 + 2270 0.67 0.266661
Target:  5'- -gUCGUGC---GCCGUgGCCGGCaCGCc -3'
miRNA:   3'- ugAGCGCGguuCGGCAgCGGCCG-GUG- -5'
26033 5' -62.5 NC_005342.2 + 7576 0.67 0.266661
Target:  5'- cGCgagUGCGCCGaacAGU--UCGUCGGCCGCu -3'
miRNA:   3'- -UGa--GCGCGGU---UCGgcAGCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 31112 0.67 0.260134
Target:  5'- gGC-CGUGCCGAacagucgcccGUCGaUCGCCuuGGCCGCg -3'
miRNA:   3'- -UGaGCGCGGUU----------CGGC-AGCGG--CCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 9639 0.67 0.260134
Target:  5'- aGCggCGCGCCcGGCUGUaGCUGGCgcuuCACg -3'
miRNA:   3'- -UGa-GCGCGGuUCGGCAgCGGCCG----GUG- -5'
26033 5' -62.5 NC_005342.2 + 40561 0.67 0.260134
Target:  5'- gGCgCGCGCCuucUgGUCGCCGGCgAUg -3'
miRNA:   3'- -UGaGCGCGGuucGgCAGCGGCCGgUG- -5'
26033 5' -62.5 NC_005342.2 + 10560 0.67 0.260134
Target:  5'- --aCGCGCCGGGCCGgccgacgaGCgGGUCGg -3'
miRNA:   3'- ugaGCGCGGUUCGGCag------CGgCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 11058 0.67 0.260134
Target:  5'- gGCgCGCGUCGugagcGGCgUGUCGCCGcGCUGCg -3'
miRNA:   3'- -UGaGCGCGGU-----UCG-GCAGCGGC-CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 189 0.67 0.259489
Target:  5'- gGCUUGCGCCAuaaaugugcgucgGGUCGccccaCGCCGuGCCGu -3'
miRNA:   3'- -UGAGCGCGGU-------------UCGGCa----GCGGC-CGGUg -5'
26033 5' -62.5 NC_005342.2 + 1851 0.67 0.258202
Target:  5'- --gCGCGCCuGGCCcggauuggcgggGUCGCCGaucaggaaguaccaGCCACg -3'
miRNA:   3'- ugaGCGCGGuUCGG------------CAGCGGC--------------CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 19618 0.67 0.253739
Target:  5'- gGCgagCGCGgCGagcgcGGCCGaCGCUGGCCGu -3'
miRNA:   3'- -UGa--GCGCgGU-----UCGGCaGCGGCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 6770 0.67 0.253739
Target:  5'- gACagCGCGCCGAucuucGCCuGUCGCaaCGGCgGCa -3'
miRNA:   3'- -UGa-GCGCGGUU-----CGG-CAGCG--GCCGgUG- -5'
26033 5' -62.5 NC_005342.2 + 7708 0.68 0.247474
Target:  5'- -aUCGuUGaUCAGGCCGUaguucucgagGCCGGCCACg -3'
miRNA:   3'- ugAGC-GC-GGUUCGGCAg---------CGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 2661 0.68 0.246854
Target:  5'- aGCgUCGCGCCGgcggcggccgacaGGCCGagcUCGUCGGCgAg -3'
miRNA:   3'- -UG-AGCGCGGU-------------UCGGC---AGCGGCCGgUg -5'
26033 5' -62.5 NC_005342.2 + 30910 0.68 0.241337
Target:  5'- uGCUCGacaaCGCCGAcauuuGCCGguugucaUGCCGGUCGCg -3'
miRNA:   3'- -UGAGC----GCGGUU-----CGGCa------GCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 6414 0.68 0.241337
Target:  5'- cGCUCGCgGCCGGgcGCCGUCGUgccguCGGgCAg -3'
miRNA:   3'- -UGAGCG-CGGUU--CGGCAGCG-----GCCgGUg -5'
26033 5' -62.5 NC_005342.2 + 5492 0.68 0.235327
Target:  5'- cUUCGCggggauauagGUCAuGCCGUgGCCGGCgACg -3'
miRNA:   3'- uGAGCG----------CGGUuCGGCAgCGGCCGgUG- -5'
26033 5' -62.5 NC_005342.2 + 38349 0.68 0.235327
Target:  5'- gGCgcaggCGCGCCGccggcAGCCGgugCGCaacCGGCCGa -3'
miRNA:   3'- -UGa----GCGCGGU-----UCGGCa--GCG---GCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 9434 0.68 0.229444
Target:  5'- --gCGCGCCAAGUgCGggCGCCGcaccGCCGCc -3'
miRNA:   3'- ugaGCGCGGUUCG-GCa-GCGGC----CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 39346 0.68 0.229444
Target:  5'- cGC-CGCGCCGAGCucgaCGUCGCgcauCGGCUucguGCa -3'
miRNA:   3'- -UGaGCGCGGUUCG----GCAGCG----GCCGG----UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.