miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26036 5' -53.9 NC_005342.2 + 29261 0.66 0.703245
Target:  5'- cCGCaCGAg--GCGgGCGuCGGUUCAGAa -3'
miRNA:   3'- aGCG-GCUagaCGCgCGU-GUCAAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 40891 0.66 0.703245
Target:  5'- cUGCCGGUCUGgauaugGCGCACA--UCGAu -3'
miRNA:   3'- aGCGGCUAGACg-----CGCGUGUcaAGUUu -5'
26036 5' -53.9 NC_005342.2 + 26821 0.66 0.692045
Target:  5'- aCGUCaagUUGCGCGCGCucGUUCAGGg -3'
miRNA:   3'- aGCGGcuaGACGCGCGUGu-CAAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 28701 0.67 0.635359
Target:  5'- gUCGCCGGa-UGCGUGCAU-GUUCGu- -3'
miRNA:   3'- -AGCGGCUagACGCGCGUGuCAAGUuu -5'
26036 5' -53.9 NC_005342.2 + 23258 0.67 0.623967
Target:  5'- aCGCUG-UC-GCGCGCGCGGaUCGGc -3'
miRNA:   3'- aGCGGCuAGaCGCGCGUGUCaAGUUu -5'
26036 5' -53.9 NC_005342.2 + 19249 0.68 0.578578
Target:  5'- aCGCCGAUCcgGCGgcCGCGCAgcugauugccgcGUUCGAc -3'
miRNA:   3'- aGCGGCUAGa-CGC--GCGUGU------------CAAGUUu -5'
26036 5' -53.9 NC_005342.2 + 17113 0.69 0.55613
Target:  5'- uUCGCCGggCUcGCGCGCgagcaGCAGcUCGc- -3'
miRNA:   3'- -AGCGGCuaGA-CGCGCG-----UGUCaAGUuu -5'
26036 5' -53.9 NC_005342.2 + 9059 0.69 0.53394
Target:  5'- cUGCCGGUgCaGCGCGCGCAGcaCGGg -3'
miRNA:   3'- aGCGGCUA-GaCGCGCGUGUCaaGUUu -5'
26036 5' -53.9 NC_005342.2 + 45857 0.7 0.490584
Target:  5'- aCGCCGAaCUGCaGCGCGCcgaaUUCGAGg -3'
miRNA:   3'- aGCGGCUaGACG-CGCGUGuc--AAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 1495 0.7 0.479998
Target:  5'- aCGCCGAg-UGCGuCGguCAGUUCGGu -3'
miRNA:   3'- aGCGGCUagACGC-GCguGUCAAGUUu -5'
26036 5' -53.9 NC_005342.2 + 46481 0.73 0.320406
Target:  5'- cUCGCCG-UC-GCuCGCGCAGUUCGAGc -3'
miRNA:   3'- -AGCGGCuAGaCGcGCGUGUCAAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 3283 0.75 0.240235
Target:  5'- cCGCCGAcgUGCGCGCGCAGgaUAGc -3'
miRNA:   3'- aGCGGCUagACGCGCGUGUCaaGUUu -5'
26036 5' -53.9 NC_005342.2 + 34166 0.75 0.233843
Target:  5'- gUCGCCGucgCUGCgccucGCGCGcCAGUUCGAAg -3'
miRNA:   3'- -AGCGGCua-GACG-----CGCGU-GUCAAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 30566 0.75 0.227594
Target:  5'- -gGCCGcgCUGUGCGaGCAGUUCGAu -3'
miRNA:   3'- agCGGCuaGACGCGCgUGUCAAGUUu -5'
26036 5' -53.9 NC_005342.2 + 9935 0.78 0.154132
Target:  5'- uUCGCCGGUCgccGCGUGCACGGUcgcgcgugcaUCGAu -3'
miRNA:   3'- -AGCGGCUAGa--CGCGCGUGUCA----------AGUUu -5'
26036 5' -53.9 NC_005342.2 + 6992 0.66 0.736348
Target:  5'- gUGUCGAUCUGCGggaaGCGCAGcgacggCGAc -3'
miRNA:   3'- aGCGGCUAGACGCg---CGUGUCaa----GUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.