Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26036 | 5' | -53.9 | NC_005342.2 | + | 2088 | 0.71 | 0.419018 |
Target: 5'- aUCGCCucGAauUCgGCGCGCuGCAGUUCGGc -3' miRNA: 3'- -AGCGG--CU--AGaCGCGCG-UGUCAAGUUu -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 9040 | 0.72 | 0.380152 |
Target: 5'- aCGCCGAUCUGCGUGagcgccuCGCGGUa---- -3' miRNA: 3'- aGCGGCUAGACGCGC-------GUGUCAaguuu -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 7014 | 0.67 | 0.658123 |
Target: 5'- -gGUCGGUuugaaCUGUGCGCGCAGaUCGGc -3' miRNA: 3'- agCGGCUA-----GACGCGCGUGUCaAGUUu -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 21631 | 0.67 | 0.635359 |
Target: 5'- uUCGauCCGGaaggcaugCUGCGCGCGCAGaUCGGc -3' miRNA: 3'- -AGC--GGCUa-------GACGCGCGUGUCaAGUUu -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 45827 | 0.67 | 0.622828 |
Target: 5'- -gGCCGAgcgCgGUGCGCGCuacggcaAGUUCGAGg -3' miRNA: 3'- agCGGCUa--GaCGCGCGUG-------UCAAGUUU- -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 44652 | 0.68 | 0.617135 |
Target: 5'- gCGCCGAagaagucggcagcuaUcCUGCGCGCGCAcgUCGGc -3' miRNA: 3'- aGCGGCU---------------A-GACGCGCGUGUcaAGUUu -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 30941 | 0.66 | 0.736348 |
Target: 5'- aUGCCGGUCgcgacgGC-CGCGCGGcgCAGc -3' miRNA: 3'- aGCGGCUAGa-----CGcGCGUGUCaaGUUu -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 7247 | 0.66 | 0.680784 |
Target: 5'- aCGCCGAucaUCUGCGCG-ACGG--CGAAc -3' miRNA: 3'- aGCGGCU---AGACGCGCgUGUCaaGUUU- -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 23587 | 0.66 | 0.679655 |
Target: 5'- cCGCCGAgcaUCauccaccaagcgaUGCGCGCGaccuGGUUCAAc -3' miRNA: 3'- aGCGGCU---AG-------------ACGCGCGUg---UCAAGUUu -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 14282 | 0.67 | 0.623967 |
Target: 5'- aUGUCGAUCaGCGCGgCGCcGUUCGc- -3' miRNA: 3'- aGCGGCUAGaCGCGC-GUGuCAAGUuu -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 24695 | 0.71 | 0.428857 |
Target: 5'- aUGCCGAUCcGCGCGCGCGa------ -3' miRNA: 3'- aGCGGCUAGaCGCGCGUGUcaaguuu -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 47366 | 0.66 | 0.703245 |
Target: 5'- gUCGCCGAgaUGgGCGgCAC-GUUCGAu -3' miRNA: 3'- -AGCGGCUagACgCGC-GUGuCAAGUUu -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 23539 | 0.7 | 0.45814 |
Target: 5'- cCGCCGAUCUGCGUagcugucgcgaacGCAUug-UCGAAa -3' miRNA: 3'- aGCGGCUAGACGCG-------------CGUGucaAGUUU- -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 20749 | 0.67 | 0.658123 |
Target: 5'- aUCGCCGAcgcggCUGCGCGC-CuGaacgUCGAc -3' miRNA: 3'- -AGCGGCUa----GACGCGCGuGuCa---AGUUu -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 29936 | 0.66 | 0.714371 |
Target: 5'- cCGCCGAUCgaucgacGCGCcGCGCGcgaucagcgcGUUCAu- -3' miRNA: 3'- aGCGGCUAGa------CGCG-CGUGU----------CAAGUuu -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 40953 | 0.69 | 0.544998 |
Target: 5'- gUCGCCGucgCUGCGCuuccCGCAGaUCGAc -3' miRNA: 3'- -AGCGGCua-GACGCGc---GUGUCaAGUUu -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 17833 | 0.71 | 0.399757 |
Target: 5'- gCGCC-AUCgGCGCGUGcCAGUUCGAAu -3' miRNA: 3'- aGCGGcUAGaCGCGCGU-GUCAAGUUU- -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 34166 | 0.75 | 0.233843 |
Target: 5'- gUCGCCGucgCUGCgccucGCGCGcCAGUUCGAAg -3' miRNA: 3'- -AGCGGCua-GACG-----CGCGU-GUCAAGUUU- -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 3283 | 0.75 | 0.240235 |
Target: 5'- cCGCCGAcgUGCGCGCGCAGgaUAGc -3' miRNA: 3'- aGCGGCUagACGCGCGUGUCaaGUUu -5' |
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26036 | 5' | -53.9 | NC_005342.2 | + | 46481 | 0.73 | 0.320406 |
Target: 5'- cUCGCCG-UC-GCuCGCGCAGUUCGAGc -3' miRNA: 3'- -AGCGGCuAGaCGcGCGUGUCAAGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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