miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26036 5' -53.9 NC_005342.2 + 1495 0.7 0.479998
Target:  5'- aCGCCGAg-UGCGuCGguCAGUUCGGu -3'
miRNA:   3'- aGCGGCUagACGC-GCguGUCAAGUUu -5'
26036 5' -53.9 NC_005342.2 + 2088 0.71 0.419018
Target:  5'- aUCGCCucGAauUCgGCGCGCuGCAGUUCGGc -3'
miRNA:   3'- -AGCGG--CU--AGaCGCGCG-UGUCAAGUUu -5'
26036 5' -53.9 NC_005342.2 + 3283 0.75 0.240235
Target:  5'- cCGCCGAcgUGCGCGCGCAGgaUAGc -3'
miRNA:   3'- aGCGGCUagACGCGCGUGUCaaGUUu -5'
26036 5' -53.9 NC_005342.2 + 6992 0.66 0.736348
Target:  5'- gUGUCGAUCUGCGggaaGCGCAGcgacggCGAc -3'
miRNA:   3'- aGCGGCUAGACGCg---CGUGUCaa----GUUu -5'
26036 5' -53.9 NC_005342.2 + 7014 0.67 0.658123
Target:  5'- -gGUCGGUuugaaCUGUGCGCGCAGaUCGGc -3'
miRNA:   3'- agCGGCUA-----GACGCGCGUGUCaAGUUu -5'
26036 5' -53.9 NC_005342.2 + 7247 0.66 0.680784
Target:  5'- aCGCCGAucaUCUGCGCG-ACGG--CGAAc -3'
miRNA:   3'- aGCGGCU---AGACGCGCgUGUCaaGUUU- -5'
26036 5' -53.9 NC_005342.2 + 9040 0.72 0.380152
Target:  5'- aCGCCGAUCUGCGUGagcgccuCGCGGUa---- -3'
miRNA:   3'- aGCGGCUAGACGCGC-------GUGUCAaguuu -5'
26036 5' -53.9 NC_005342.2 + 9059 0.69 0.53394
Target:  5'- cUGCCGGUgCaGCGCGCGCAGcaCGGg -3'
miRNA:   3'- aGCGGCUA-GaCGCGCGUGUCaaGUUu -5'
26036 5' -53.9 NC_005342.2 + 9345 0.66 0.714371
Target:  5'- gUGCCGAUCaGCGCGaaGCGGcgCGGGu -3'
miRNA:   3'- aGCGGCUAGaCGCGCg-UGUCaaGUUU- -5'
26036 5' -53.9 NC_005342.2 + 9935 0.78 0.154132
Target:  5'- uUCGCCGGUCgccGCGUGCACGGUcgcgcgugcaUCGAu -3'
miRNA:   3'- -AGCGGCUAGa--CGCGCGUGUCA----------AGUUu -5'
26036 5' -53.9 NC_005342.2 + 14282 0.67 0.623967
Target:  5'- aUGUCGAUCaGCGCGgCGCcGUUCGc- -3'
miRNA:   3'- aGCGGCUAGaCGCGC-GUGuCAAGUuu -5'
26036 5' -53.9 NC_005342.2 + 17113 0.69 0.55613
Target:  5'- uUCGCCGggCUcGCGCGCgagcaGCAGcUCGc- -3'
miRNA:   3'- -AGCGGCuaGA-CGCGCG-----UGUCaAGUuu -5'
26036 5' -53.9 NC_005342.2 + 17833 0.71 0.399757
Target:  5'- gCGCC-AUCgGCGCGUGcCAGUUCGAAu -3'
miRNA:   3'- aGCGGcUAGaCGCGCGU-GUCAAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 19249 0.68 0.578578
Target:  5'- aCGCCGAUCcgGCGgcCGCGCAgcugauugccgcGUUCGAc -3'
miRNA:   3'- aGCGGCUAGa-CGC--GCGUGU------------CAAGUUu -5'
26036 5' -53.9 NC_005342.2 + 20749 0.67 0.658123
Target:  5'- aUCGCCGAcgcggCUGCGCGC-CuGaacgUCGAc -3'
miRNA:   3'- -AGCGGCUa----GACGCGCGuGuCa---AGUUu -5'
26036 5' -53.9 NC_005342.2 + 21631 0.67 0.635359
Target:  5'- uUCGauCCGGaaggcaugCUGCGCGCGCAGaUCGGc -3'
miRNA:   3'- -AGC--GGCUa-------GACGCGCGUGUCaAGUUu -5'
26036 5' -53.9 NC_005342.2 + 23258 0.67 0.623967
Target:  5'- aCGCUG-UC-GCGCGCGCGGaUCGGc -3'
miRNA:   3'- aGCGGCuAGaCGCGCGUGUCaAGUUu -5'
26036 5' -53.9 NC_005342.2 + 23539 0.7 0.45814
Target:  5'- cCGCCGAUCUGCGUagcugucgcgaacGCAUug-UCGAAa -3'
miRNA:   3'- aGCGGCUAGACGCG-------------CGUGucaAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 23587 0.66 0.679655
Target:  5'- cCGCCGAgcaUCauccaccaagcgaUGCGCGCGaccuGGUUCAAc -3'
miRNA:   3'- aGCGGCU---AG-------------ACGCGCGUg---UCAAGUUu -5'
26036 5' -53.9 NC_005342.2 + 24695 0.71 0.428857
Target:  5'- aUGCCGAUCcGCGCGCGCGa------ -3'
miRNA:   3'- aGCGGCUAGaCGCGCGUGUcaaguuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.