miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26036 5' -53.9 NC_005342.2 + 40931 1.07 0.00142
Target:  5'- aUCGCCGAUCUGCGCGCACAGUUCAAAc -3'
miRNA:   3'- -AGCGGCUAGACGCGCGUGUCAAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 26311 0.83 0.072093
Target:  5'- -gGCCGAUCUGCGCGCGCAGc----- -3'
miRNA:   3'- agCGGCUAGACGCGCGUGUCaaguuu -5'
26036 5' -53.9 NC_005342.2 + 9935 0.78 0.154132
Target:  5'- uUCGCCGGUCgccGCGUGCACGGUcgcgcgugcaUCGAu -3'
miRNA:   3'- -AGCGGCUAGa--CGCGCGUGUCA----------AGUUu -5'
26036 5' -53.9 NC_005342.2 + 30566 0.75 0.227594
Target:  5'- -gGCCGcgCUGUGCGaGCAGUUCGAu -3'
miRNA:   3'- agCGGCuaGACGCGCgUGUCAAGUUu -5'
26036 5' -53.9 NC_005342.2 + 34166 0.75 0.233843
Target:  5'- gUCGCCGucgCUGCgccucGCGCGcCAGUUCGAAg -3'
miRNA:   3'- -AGCGGCua-GACG-----CGCGU-GUCAAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 3283 0.75 0.240235
Target:  5'- cCGCCGAcgUGCGCGCGCAGgaUAGc -3'
miRNA:   3'- aGCGGCUagACGCGCGUGUCaaGUUu -5'
26036 5' -53.9 NC_005342.2 + 46481 0.73 0.320406
Target:  5'- cUCGCCG-UC-GCuCGCGCAGUUCGAGc -3'
miRNA:   3'- -AGCGGCuAGaCGcGCGUGUCAAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 9040 0.72 0.380152
Target:  5'- aCGCCGAUCUGCGUGagcgccuCGCGGUa---- -3'
miRNA:   3'- aGCGGCUAGACGCGC-------GUGUCAaguuu -5'
26036 5' -53.9 NC_005342.2 + 17833 0.71 0.399757
Target:  5'- gCGCC-AUCgGCGCGUGcCAGUUCGAAu -3'
miRNA:   3'- aGCGGcUAGaCGCGCGU-GUCAAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 2088 0.71 0.419018
Target:  5'- aUCGCCucGAauUCgGCGCGCuGCAGUUCGGc -3'
miRNA:   3'- -AGCGG--CU--AGaCGCGCG-UGUCAAGUUu -5'
26036 5' -53.9 NC_005342.2 + 24695 0.71 0.428857
Target:  5'- aUGCCGAUCcGCGCGCGCGa------ -3'
miRNA:   3'- aGCGGCUAGaCGCGCGUGUcaaguuu -5'
26036 5' -53.9 NC_005342.2 + 23539 0.7 0.45814
Target:  5'- cCGCCGAUCUGCGUagcugucgcgaacGCAUug-UCGAAa -3'
miRNA:   3'- aGCGGCUAGACGCG-------------CGUGucaAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 1495 0.7 0.479998
Target:  5'- aCGCCGAg-UGCGuCGguCAGUUCGGu -3'
miRNA:   3'- aGCGGCUagACGC-GCguGUCAAGUUu -5'
26036 5' -53.9 NC_005342.2 + 45857 0.7 0.490584
Target:  5'- aCGCCGAaCUGCaGCGCGCcgaaUUCGAGg -3'
miRNA:   3'- aGCGGCUaGACG-CGCGUGuc--AAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 9059 0.69 0.53394
Target:  5'- cUGCCGGUgCaGCGCGCGCAGcaCGGg -3'
miRNA:   3'- aGCGGCUA-GaCGCGCGUGUCaaGUUu -5'
26036 5' -53.9 NC_005342.2 + 40953 0.69 0.544998
Target:  5'- gUCGCCGucgCUGCGCuuccCGCAGaUCGAc -3'
miRNA:   3'- -AGCGGCua-GACGCGc---GUGUCaAGUUu -5'
26036 5' -53.9 NC_005342.2 + 17113 0.69 0.55613
Target:  5'- uUCGCCGggCUcGCGCGCgagcaGCAGcUCGc- -3'
miRNA:   3'- -AGCGGCuaGA-CGCGCG-----UGUCaAGUuu -5'
26036 5' -53.9 NC_005342.2 + 19249 0.68 0.578578
Target:  5'- aCGCCGAUCcgGCGgcCGCGCAgcugauugccgcGUUCGAc -3'
miRNA:   3'- aGCGGCUAGa-CGC--GCGUGU------------CAAGUUu -5'
26036 5' -53.9 NC_005342.2 + 44652 0.68 0.617135
Target:  5'- gCGCCGAagaagucggcagcuaUcCUGCGCGCGCAcgUCGGc -3'
miRNA:   3'- aGCGGCU---------------A-GACGCGCGUGUcaAGUUu -5'
26036 5' -53.9 NC_005342.2 + 45827 0.67 0.622828
Target:  5'- -gGCCGAgcgCgGUGCGCGCuacggcaAGUUCGAGg -3'
miRNA:   3'- agCGGCUa--GaCGCGCGUG-------UCAAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.