miRNA display CGI


Results 21 - 40 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26038 3' -57.5 NC_005342.2 + 14156 0.7 0.363678
Target:  5'- gGCcGCUCGUCCGGguGCGGCAGCa-- -3'
miRNA:   3'- -UGaUGAGCAGGCUgcCGCUGUCGccg -5'
26038 3' -57.5 NC_005342.2 + 15470 0.73 0.239473
Target:  5'- gGCUGCUCG--CGGCGGUcacCGGCGGCg -3'
miRNA:   3'- -UGAUGAGCagGCUGCCGcu-GUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 15572 0.67 0.525975
Target:  5'- cGCUGCUCGUCgGucACGGUuuCGGCGa- -3'
miRNA:   3'- -UGAUGAGCAGgC--UGCCGcuGUCGCcg -5'
26038 3' -57.5 NC_005342.2 + 17074 0.67 0.505258
Target:  5'- --cGC-CGUuuGgGCGGCGACgccaaggcaGGCGGCg -3'
miRNA:   3'- ugaUGaGCAggC-UGCCGCUG---------UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 17554 0.68 0.484899
Target:  5'- gUUGC-CGccgCCGGCGGCGGCGcgaaCGGCu -3'
miRNA:   3'- uGAUGaGCa--GGCUGCCGCUGUc---GCCG- -5'
26038 3' -57.5 NC_005342.2 + 17624 0.68 0.445418
Target:  5'- cGCUGCUgcacgaccuggCGUCCGGCcugggguuucucGGCGA-AGCGGUc -3'
miRNA:   3'- -UGAUGA-----------GCAGGCUG------------CCGCUgUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 17919 0.66 0.551243
Target:  5'- gGCcGCgCGcCUGGCGgguggcgucgcagguGCGACGGCGGCc -3'
miRNA:   3'- -UGaUGaGCaGGCUGC---------------CGCUGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 18256 0.68 0.455123
Target:  5'- --gGCUCGcaUUCGGCgcuGGCGGCAgcGCGGCc -3'
miRNA:   3'- ugaUGAGC--AGGCUG---CCGCUGU--CGCCG- -5'
26038 3' -57.5 NC_005342.2 + 18398 0.66 0.568294
Target:  5'- -gUGC-CGUCCGaaGCGcaacgccucGCGAuCGGCGGCg -3'
miRNA:   3'- ugAUGaGCAGGC--UGC---------CGCU-GUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 18493 0.77 0.12614
Target:  5'- cGCUGC-CGgcacgCCGACGGaCGcuGCAGCGGCc -3'
miRNA:   3'- -UGAUGaGCa----GGCUGCC-GC--UGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 19095 0.67 0.525975
Target:  5'- gGCUACg---CCGAC-GCGAUGGCGGa -3'
miRNA:   3'- -UGAUGagcaGGCUGcCGCUGUCGCCg -5'
26038 3' -57.5 NC_005342.2 + 19702 0.66 0.600585
Target:  5'- uGCUGCUCG--CGugcuCGGCGcUGGUGGCg -3'
miRNA:   3'- -UGAUGAGCagGCu---GCCGCuGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 20158 0.71 0.314488
Target:  5'- cCUACUCGgccgCCGGCucgGGCGcACacaagaaGGCGGCa -3'
miRNA:   3'- uGAUGAGCa---GGCUG---CCGC-UG-------UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 20856 0.69 0.417018
Target:  5'- cCUGCUCGaacgCCacaagguaugGGCGGCGACAagccCGGCg -3'
miRNA:   3'- uGAUGAGCa---GG----------CUGCCGCUGUc---GCCG- -5'
26038 3' -57.5 NC_005342.2 + 21073 0.66 0.568294
Target:  5'- -gUGCUCGaUCCGGCagaaGGUGACAuCGGg -3'
miRNA:   3'- ugAUGAGC-AGGCUG----CCGCUGUcGCCg -5'
26038 3' -57.5 NC_005342.2 + 22047 0.66 0.589784
Target:  5'- aGCUACgugcaagCG-CagGGCGGCGAagcGCGGCg -3'
miRNA:   3'- -UGAUGa------GCaGg-CUGCCGCUgu-CGCCG- -5'
26038 3' -57.5 NC_005342.2 + 22166 0.78 0.098224
Target:  5'- cCUugUCG-CCGGCGGCaGcCGGCGGCg -3'
miRNA:   3'- uGAugAGCaGGCUGCCG-CuGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 22932 0.66 0.589784
Target:  5'- aACUACcCGauUCCGGCGcacucguuGCGAUcagcgugacgGGCGGCg -3'
miRNA:   3'- -UGAUGaGC--AGGCUGC--------CGCUG----------UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 23006 0.68 0.474868
Target:  5'- --aACUCGaagCuCGACuGCGGCuGCGGCu -3'
miRNA:   3'- ugaUGAGCa--G-GCUGcCGCUGuCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 23092 0.68 0.43583
Target:  5'- aGCUGCaUCGguugCGuCGGCuGaACAGCGGCg -3'
miRNA:   3'- -UGAUG-AGCag--GCuGCCG-C-UGUCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.