miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26038 3' -57.5 NC_005342.2 + 705 0.66 0.600585
Target:  5'- uACUGgUCGcgCCGGcCGGCGccucguucaGC-GCGGCa -3'
miRNA:   3'- -UGAUgAGCa-GGCU-GCCGC---------UGuCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 1477 0.67 0.495031
Target:  5'- aACUGCgCGagCGACGGCGAguCGGCcuGCa -3'
miRNA:   3'- -UGAUGaGCagGCUGCCGCU--GUCGc-CG- -5'
26038 3' -57.5 NC_005342.2 + 2623 0.72 0.285767
Target:  5'- --cGCUCG-CCGgcguaucgGCGGCGACAcCGGCa -3'
miRNA:   3'- ugaUGAGCaGGC--------UGCCGCUGUcGCCG- -5'
26038 3' -57.5 NC_005342.2 + 2656 0.7 0.372233
Target:  5'- cCUGCagCGUCgCGcCGGCGGCGGCcgacaGGCc -3'
miRNA:   3'- uGAUGa-GCAG-GCuGCCGCUGUCG-----CCG- -5'
26038 3' -57.5 NC_005342.2 + 3273 0.68 0.474868
Target:  5'- uCUcCUUGUgCGcGCGGCGGCGcGCGGUu -3'
miRNA:   3'- uGAuGAGCAgGC-UGCCGCUGU-CGCCG- -5'
26038 3' -57.5 NC_005342.2 + 3491 0.67 0.536454
Target:  5'- aGCUGCUgCGgCUGAuCGGCGuaaAGCGGg -3'
miRNA:   3'- -UGAUGA-GCaGGCU-GCCGCug-UCGCCg -5'
26038 3' -57.5 NC_005342.2 + 3626 0.81 0.069991
Target:  5'- cCUGCUCG-C--GCGGCGGCAGCGGCa -3'
miRNA:   3'- uGAUGAGCaGgcUGCCGCUGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 5271 0.74 0.199614
Target:  5'- --cGCUCGUCCGcCGGCGAgGguGCGGg -3'
miRNA:   3'- ugaUGAGCAGGCuGCCGCUgU--CGCCg -5'
26038 3' -57.5 NC_005342.2 + 6843 0.77 0.133273
Target:  5'- cACUGCauugcgcagccaUCGagCGgaucGCGGCGACAGCGGCg -3'
miRNA:   3'- -UGAUG------------AGCagGC----UGCCGCUGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 7520 0.69 0.417018
Target:  5'- aGCgACUUGccgCCGcCGGUGACGaucGCGGCg -3'
miRNA:   3'- -UGaUGAGCa--GGCuGCCGCUGU---CGCCG- -5'
26038 3' -57.5 NC_005342.2 + 8017 0.71 0.322974
Target:  5'- --gACUCG-CCGACGaGCu-CGGCGGCc -3'
miRNA:   3'- ugaUGAGCaGGCUGC-CGcuGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 8638 0.67 0.514539
Target:  5'- cUUGCUCGUgacggugCCGuCGGCGuuCAGCacGGCg -3'
miRNA:   3'- uGAUGAGCA-------GGCuGCCGCu-GUCG--CCG- -5'
26038 3' -57.5 NC_005342.2 + 8945 0.68 0.455123
Target:  5'- gGCUGgaUCGUgCGGCcGUGcGCGGCGGCg -3'
miRNA:   3'- -UGAUg-AGCAgGCUGcCGC-UGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 9027 0.67 0.536454
Target:  5'- cGCaGCUCGgCCGACGG-GAUGcGCGGg -3'
miRNA:   3'- -UGaUGAGCaGGCUGCCgCUGU-CGCCg -5'
26038 3' -57.5 NC_005342.2 + 11047 0.7 0.355259
Target:  5'- --aACUCGgcaCCGGCGcGCgucGugAGCGGCg -3'
miRNA:   3'- ugaUGAGCa--GGCUGC-CG---CugUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 11873 0.74 0.210375
Target:  5'- cCUugUCGUCgCGGCccGGCaugcGCAGCGGCg -3'
miRNA:   3'- uGAugAGCAG-GCUG--CCGc---UGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 12256 0.68 0.445418
Target:  5'- -gUACaCGgcaCCGGCGGCGcGCAuuGCGGCg -3'
miRNA:   3'- ugAUGaGCa--GGCUGCCGC-UGU--CGCCG- -5'
26038 3' -57.5 NC_005342.2 + 12875 0.67 0.536454
Target:  5'- -gUGC-CGUCaGGCGGCuuGGgGGCGGCu -3'
miRNA:   3'- ugAUGaGCAGgCUGCCG--CUgUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 13481 0.68 0.455123
Target:  5'- uCUGCUucagcuggucgcCGUCCGACGugcucGCGGCguugccgccGGCGGCc -3'
miRNA:   3'- uGAUGA------------GCAGGCUGC-----CGCUG---------UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 13791 0.66 0.600585
Target:  5'- --cGCgaggCGcagCGACGGCGACGGUucGGCg -3'
miRNA:   3'- ugaUGa---GCag-GCUGCCGCUGUCG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.