Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26038 | 3' | -57.5 | NC_005342.2 | + | 40037 | 1.12 | 0.000369 |
Target: 5'- gACUACUCGUCCGACGGCGACAGCGGCg -3' miRNA: 3'- -UGAUGAGCAGGCUGCCGCUGUCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 29455 | 0.84 | 0.037204 |
Target: 5'- cGCUGCagCGUCCGuCGGCGugccgGCAGCGGCg -3' miRNA: 3'- -UGAUGa-GCAGGCuGCCGC-----UGUCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 43104 | 0.82 | 0.057313 |
Target: 5'- cGCUACaUgGUCa-GCGGCGGCAGCGGCa -3' miRNA: 3'- -UGAUG-AgCAGgcUGCCGCUGUCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 3626 | 0.81 | 0.069991 |
Target: 5'- cCUGCUCG-C--GCGGCGGCAGCGGCa -3' miRNA: 3'- uGAUGAGCaGgcUGCCGCUGUCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 47826 | 0.8 | 0.08297 |
Target: 5'- uGCUGCUCGgugCCGACgaGGCGcaGGCGGCa -3' miRNA: 3'- -UGAUGAGCa--GGCUG--CCGCugUCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 22166 | 0.78 | 0.098224 |
Target: 5'- cCUugUCG-CCGGCGGCaGcCGGCGGCg -3' miRNA: 3'- uGAugAGCaGGCUGCCG-CuGUCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 18493 | 0.77 | 0.12614 |
Target: 5'- cGCUGC-CGgcacgCCGACGGaCGcuGCAGCGGCc -3' miRNA: 3'- -UGAUGaGCa----GGCUGCC-GC--UGUCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 6843 | 0.77 | 0.133273 |
Target: 5'- cACUGCauugcgcagccaUCGagCGgaucGCGGCGACAGCGGCg -3' miRNA: 3'- -UGAUG------------AGCagGC----UGCCGCUGUCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 28635 | 0.75 | 0.179527 |
Target: 5'- cGCgUACUUG-CCGuCGGUGcGCAGCGGCg -3' miRNA: 3'- -UG-AUGAGCaGGCuGCCGC-UGUCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 5271 | 0.74 | 0.199614 |
Target: 5'- --cGCUCGUCCGcCGGCGAgGguGCGGg -3' miRNA: 3'- ugaUGAGCAGGCuGCCGCUgU--CGCCg -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 11873 | 0.74 | 0.210375 |
Target: 5'- cCUugUCGUCgCGGCccGGCaugcGCAGCGGCg -3' miRNA: 3'- uGAugAGCAG-GCUG--CCGc---UGUCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 15470 | 0.73 | 0.239473 |
Target: 5'- gGCUGCUCG--CGGCGGUcacCGGCGGCg -3' miRNA: 3'- -UGAUGAGCagGCUGCCGcu-GUCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 47700 | 0.73 | 0.239473 |
Target: 5'- aGCUGCUCGgcgcgcuggUCGuCGGCGucauCGGCGGUg -3' miRNA: 3'- -UGAUGAGCa--------GGCuGCCGCu---GUCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 2623 | 0.72 | 0.285767 |
Target: 5'- --cGCUCG-CCGgcguaucgGCGGCGACAcCGGCa -3' miRNA: 3'- ugaUGAGCaGGC--------UGCCGCUGUcGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 32090 | 0.71 | 0.292929 |
Target: 5'- --cGCaUCGUCuaCGAUGGCGgucACGGCGGCu -3' miRNA: 3'- ugaUG-AGCAG--GCUGCCGC---UGUCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 20158 | 0.71 | 0.314488 |
Target: 5'- cCUACUCGgccgCCGGCucgGGCGcACacaagaaGGCGGCa -3' miRNA: 3'- uGAUGAGCa---GGCUG---CCGC-UG-------UCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 8017 | 0.71 | 0.322974 |
Target: 5'- --gACUCG-CCGACGaGCu-CGGCGGCc -3' miRNA: 3'- ugaUGAGCaGGCUGC-CGcuGUCGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 39010 | 0.7 | 0.344522 |
Target: 5'- gGCUGCUCacccggggcuggcagCCGAuucgcuCGGCGGCGGCGcGCu -3' miRNA: 3'- -UGAUGAGca-------------GGCU------GCCGCUGUCGC-CG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 34212 | 0.7 | 0.355259 |
Target: 5'- aACUACaCG-CCGcGCGaGCGGCGcGCGGCg -3' miRNA: 3'- -UGAUGaGCaGGC-UGC-CGCUGU-CGCCG- -5' |
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26038 | 3' | -57.5 | NC_005342.2 | + | 11047 | 0.7 | 0.355259 |
Target: 5'- --aACUCGgcaCCGGCGcGCgucGugAGCGGCg -3' miRNA: 3'- ugaUGAGCa--GGCUGC-CG---CugUCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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