miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26038 3' -57.5 NC_005342.2 + 47826 0.8 0.08297
Target:  5'- uGCUGCUCGgugCCGACgaGGCGcaGGCGGCa -3'
miRNA:   3'- -UGAUGAGCa--GGCUG--CCGCugUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 45133 0.69 0.396908
Target:  5'- gGC-ACUCGguuucggcggcgCCGACGGCGcauucgcgagcAUGGCGGCc -3'
miRNA:   3'- -UGaUGAGCa-----------GGCUGCCGC-----------UGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 20856 0.69 0.417018
Target:  5'- cCUGCUCGaacgCCacaagguaugGGCGGCGACAagccCGGCg -3'
miRNA:   3'- uGAUGAGCa---GG----------CUGCCGCUGUc---GCCG- -5'
26038 3' -57.5 NC_005342.2 + 29098 0.66 0.600585
Target:  5'- aGCgGCUCGU-UGcCGGCGaaGCAGaCGGCg -3'
miRNA:   3'- -UGaUGAGCAgGCuGCCGC--UGUC-GCCG- -5'
26038 3' -57.5 NC_005342.2 + 28635 0.75 0.179527
Target:  5'- cGCgUACUUG-CCGuCGGUGcGCAGCGGCg -3'
miRNA:   3'- -UG-AUGAGCaGGCuGCCGC-UGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 11873 0.74 0.210375
Target:  5'- cCUugUCGUCgCGGCccGGCaugcGCAGCGGCg -3'
miRNA:   3'- uGAugAGCAG-GCUG--CCGc---UGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 47700 0.73 0.239473
Target:  5'- aGCUGCUCGgcgcgcuggUCGuCGGCGucauCGGCGGUg -3'
miRNA:   3'- -UGAUGAGCa--------GGCuGCCGCu---GUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 2623 0.72 0.285767
Target:  5'- --cGCUCG-CCGgcguaucgGCGGCGACAcCGGCa -3'
miRNA:   3'- ugaUGAGCaGGC--------UGCCGCUGUcGCCG- -5'
26038 3' -57.5 NC_005342.2 + 39010 0.7 0.344522
Target:  5'- gGCUGCUCacccggggcuggcagCCGAuucgcuCGGCGGCGGCGcGCu -3'
miRNA:   3'- -UGAUGAGca-------------GGCU------GCCGCUGUCGC-CG- -5'
26038 3' -57.5 NC_005342.2 + 42674 0.69 0.380925
Target:  5'- cGCUGCaacccgcacccUCG-CCGGCGGaCGAgcgGGCGGCg -3'
miRNA:   3'- -UGAUG-----------AGCaGGCUGCC-GCUg--UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 33152 0.7 0.363678
Target:  5'- aGCcGCgaGUCCGGCaGCauuGGCAGCGGCg -3'
miRNA:   3'- -UGaUGagCAGGCUGcCG---CUGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 8017 0.71 0.322974
Target:  5'- --gACUCG-CCGACGaGCu-CGGCGGCc -3'
miRNA:   3'- ugaUGAGCaGGCUGC-CGcuGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 22166 0.78 0.098224
Target:  5'- cCUugUCG-CCGGCGGCaGcCGGCGGCg -3'
miRNA:   3'- uGAugAGCaGGCUGCCG-CuGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 2656 0.7 0.372233
Target:  5'- cCUGCagCGUCgCGcCGGCGGCGGCcgacaGGCc -3'
miRNA:   3'- uGAUGa-GCAG-GCuGCCGCUGUCG-----CCG- -5'
26038 3' -57.5 NC_005342.2 + 18493 0.77 0.12614
Target:  5'- cGCUGC-CGgcacgCCGACGGaCGcuGCAGCGGCc -3'
miRNA:   3'- -UGAUGaGCa----GGCUGCC-GC--UGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 20158 0.71 0.314488
Target:  5'- cCUACUCGgccgCCGGCucgGGCGcACacaagaaGGCGGCa -3'
miRNA:   3'- uGAUGAGCa---GGCUG---CCGC-UG-------UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 33582 0.7 0.372233
Target:  5'- cGCUGCUgcagCCGAguCGGCcagcGACAGCGGUg -3'
miRNA:   3'- -UGAUGAgca-GGCU--GCCG----CUGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 35774 0.69 0.39871
Target:  5'- cGCUAC-CGUCCGAUacgacgagcuGGCccguGAC-GCGGCg -3'
miRNA:   3'- -UGAUGaGCAGGCUG----------CCG----CUGuCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 6843 0.77 0.133273
Target:  5'- cACUGCauugcgcagccaUCGagCGgaucGCGGCGACAGCGGCg -3'
miRNA:   3'- -UGAUG------------AGCagGC----UGCCGCUGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 15470 0.73 0.239473
Target:  5'- gGCUGCUCG--CGGCGGUcacCGGCGGCg -3'
miRNA:   3'- -UGAUGAGCagGCUGCCGcu-GUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.