miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26038 3' -57.5 NC_005342.2 + 23092 0.68 0.43583
Target:  5'- aGCUGCaUCGguugCGuCGGCuGaACAGCGGCg -3'
miRNA:   3'- -UGAUG-AGCag--GCuGCCG-C-UGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 47216 0.68 0.43583
Target:  5'- aGCaACgCG-CCGGCGGCGACuGCcGCg -3'
miRNA:   3'- -UGaUGaGCaGGCUGCCGCUGuCGcCG- -5'
26038 3' -57.5 NC_005342.2 + 2656 0.7 0.372233
Target:  5'- cCUGCagCGUCgCGcCGGCGGCGGCcgacaGGCc -3'
miRNA:   3'- uGAUGa-GCAG-GCuGCCGCUGUCG-----CCG- -5'
26038 3' -57.5 NC_005342.2 + 47700 0.73 0.239473
Target:  5'- aGCUGCUCGgcgcgcuggUCGuCGGCGucauCGGCGGUg -3'
miRNA:   3'- -UGAUGAGCa--------GGCuGCCGCu---GUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 41404 0.67 0.515575
Target:  5'- -gUGCUCGacgCgGGCGGCaACuucgGGCGGCa -3'
miRNA:   3'- ugAUGAGCa--GgCUGCCGcUG----UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 8945 0.68 0.455123
Target:  5'- gGCUGgaUCGUgCGGCcGUGcGCGGCGGCg -3'
miRNA:   3'- -UGAUg-AGCAgGCUGcCGC-UGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 20856 0.69 0.417018
Target:  5'- cCUGCUCGaacgCCacaagguaugGGCGGCGACAagccCGGCg -3'
miRNA:   3'- uGAUGAGCa---GG----------CUGCCGCUGUc---GCCG- -5'
26038 3' -57.5 NC_005342.2 + 15470 0.73 0.239473
Target:  5'- gGCUGCUCG--CGGCGGUcacCGGCGGCg -3'
miRNA:   3'- -UGAUGAGCagGCUGCCGcu-GUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 45711 0.68 0.455123
Target:  5'- uGCcACUCGgcgCCGAgGGCuGGCA-CGGCc -3'
miRNA:   3'- -UGaUGAGCa--GGCUgCCG-CUGUcGCCG- -5'
26038 3' -57.5 NC_005342.2 + 11873 0.74 0.210375
Target:  5'- cCUugUCGUCgCGGCccGGCaugcGCAGCGGCg -3'
miRNA:   3'- uGAugAGCAG-GCUG--CCGc---UGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 28318 0.69 0.425423
Target:  5'- --gGCUCGUUCGGauGCGACGugcugauGCGGUg -3'
miRNA:   3'- ugaUGAGCAGGCUgcCGCUGU-------CGCCG- -5'
26038 3' -57.5 NC_005342.2 + 41332 0.68 0.439651
Target:  5'- cGCUcGCUCGugcUCUGGCGGCagauugucgggcgcgGGCuGCGGCc -3'
miRNA:   3'- -UGA-UGAGC---AGGCUGCCG---------------CUGuCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 35774 0.69 0.39871
Target:  5'- cGCUAC-CGUCCGAUacgacgagcuGGCccguGAC-GCGGCg -3'
miRNA:   3'- -UGAUGaGCAGGCUG----------CCG----CUGuCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 33582 0.7 0.372233
Target:  5'- cGCUGCUgcagCCGAguCGGCcagcGACAGCGGUg -3'
miRNA:   3'- -UGAUGAgca-GGCU--GCCG----CUGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 39010 0.7 0.344522
Target:  5'- gGCUGCUCacccggggcuggcagCCGAuucgcuCGGCGGCGGCGcGCu -3'
miRNA:   3'- -UGAUGAGca-------------GGCU------GCCGCUGUCGC-CG- -5'
26038 3' -57.5 NC_005342.2 + 2623 0.72 0.285767
Target:  5'- --cGCUCG-CCGgcguaucgGCGGCGACAcCGGCa -3'
miRNA:   3'- ugaUGAGCaGGC--------UGCCGCUGUcGCCG- -5'
26038 3' -57.5 NC_005342.2 + 33093 0.66 0.55762
Target:  5'- uGCUGCcCGaUCgCGuagaACGGCGAUgccuGCGGCg -3'
miRNA:   3'- -UGAUGaGC-AG-GC----UGCCGCUGu---CGCCG- -5'
26038 3' -57.5 NC_005342.2 + 15572 0.67 0.525975
Target:  5'- cGCUGCUCGUCgGucACGGUuuCGGCGa- -3'
miRNA:   3'- -UGAUGAGCAGgC--UGCCGcuGUCGCcg -5'
26038 3' -57.5 NC_005342.2 + 1477 0.67 0.495031
Target:  5'- aACUGCgCGagCGACGGCGAguCGGCcuGCa -3'
miRNA:   3'- -UGAUGaGCagGCUGCCGCU--GUCGc-CG- -5'
26038 3' -57.5 NC_005342.2 + 13481 0.68 0.455123
Target:  5'- uCUGCUucagcuggucgcCGUCCGACGugcucGCGGCguugccgccGGCGGCc -3'
miRNA:   3'- uGAUGA------------GCAGGCUGC-----CGCUG---------UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.