miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26038 5' -52.8 NC_005342.2 + 40071 1.07 0.002073
Target:  5'- uCAACUACCCGCAACGCCAGUCGUACUu -3'
miRNA:   3'- -GUUGAUGGGCGUUGCGGUCAGCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 13075 0.66 0.819971
Target:  5'- gCAACUGCCgGCGAUGgCGGUgCGa--- -3'
miRNA:   3'- -GUUGAUGGgCGUUGCgGUCA-GCauga -5'
26038 5' -52.8 NC_005342.2 + 2331 0.66 0.810357
Target:  5'- cCAGCUcggcaagcACCUcgaGCAGCGCCucGUCGUAg- -3'
miRNA:   3'- -GUUGA--------UGGG---CGUUGCGGu-CAGCAUga -5'
26038 5' -52.8 NC_005342.2 + 495 0.66 0.809384
Target:  5'- gCGACgUGCCgGCGagcgugaACGCUucGUCGUACUu -3'
miRNA:   3'- -GUUG-AUGGgCGU-------UGCGGu-CAGCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 22230 0.66 0.800544
Target:  5'- cCGACUgGCCUGCAGCugGCCGG-CGaGCa -3'
miRNA:   3'- -GUUGA-UGGGCGUUG--CGGUCaGCaUGa -5'
26038 5' -52.8 NC_005342.2 + 19510 0.66 0.780371
Target:  5'- uGGCcgACCUGCGuuucuacggcAUGCCggaAGUCGUGCUg -3'
miRNA:   3'- gUUGa-UGGGCGU----------UGCGG---UCAGCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 36334 0.67 0.770034
Target:  5'- gCGACUACUgGCAGCGCUAcuUCG-ACa -3'
miRNA:   3'- -GUUGAUGGgCGUUGCGGUc-AGCaUGa -5'
26038 5' -52.8 NC_005342.2 + 6802 0.67 0.767948
Target:  5'- cCGACUcGCCCGCGucgagcaGCGCCuGUucgaucaugugcgCGUGCUc -3'
miRNA:   3'- -GUUGA-UGGGCGU-------UGCGGuCA-------------GCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 15858 0.67 0.738167
Target:  5'- cCGAgaACCCcgacGCGGCGCUgaacGUCGUGCUg -3'
miRNA:   3'- -GUUgaUGGG----CGUUGCGGu---CAGCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 44032 0.68 0.681834
Target:  5'- --cCUACCUGCAGaacggcgccaaccUGCCGGUCGgcCUg -3'
miRNA:   3'- guuGAUGGGCGUU-------------GCGGUCAGCauGA- -5'
26038 5' -52.8 NC_005342.2 + 2729 0.69 0.637785
Target:  5'- gGGCgcCCCGCc-CGCCAGUUGUAg- -3'
miRNA:   3'- gUUGauGGGCGuuGCGGUCAGCAUga -5'
26038 5' -52.8 NC_005342.2 + 41052 0.69 0.615121
Target:  5'- uCGACUggcGCCCGCGcACGCCucaaaCGUGCg -3'
miRNA:   3'- -GUUGA---UGGGCGU-UGCGGuca--GCAUGa -5'
26038 5' -52.8 NC_005342.2 + 6409 0.7 0.558905
Target:  5'- cCGACcGCUCGCGgccggGCGCC-GUCGUGCc -3'
miRNA:   3'- -GUUGaUGGGCGU-----UGCGGuCAGCAUGa -5'
26038 5' -52.8 NC_005342.2 + 30199 0.71 0.536793
Target:  5'- gCAAUUACCgCGCGGCGCCGGcUGaaUGCUu -3'
miRNA:   3'- -GUUGAUGG-GCGUUGCGGUCaGC--AUGA- -5'
26038 5' -52.8 NC_005342.2 + 44589 0.72 0.451985
Target:  5'- aAGCU-CCCGCGacgacggcgACGCCGGUCG-ACa -3'
miRNA:   3'- gUUGAuGGGCGU---------UGCGGUCAGCaUGa -5'
26038 5' -52.8 NC_005342.2 + 29355 0.72 0.451985
Target:  5'- -uGCcGCCCGCGccugccGCGCCGGUCGUuuguuGCa -3'
miRNA:   3'- guUGaUGGGCGU------UGCGGUCAGCA-----UGa -5'
26038 5' -52.8 NC_005342.2 + 20515 0.72 0.441893
Target:  5'- gAACUACCCGaauGGCGCCuGGUCG-ACa -3'
miRNA:   3'- gUUGAUGGGCg--UUGCGG-UCAGCaUGa -5'
26038 5' -52.8 NC_005342.2 + 34891 0.74 0.366056
Target:  5'- aCAACUGgCUGCGcacACGCCAGUCGg--- -3'
miRNA:   3'- -GUUGAUgGGCGU---UGCGGUCAGCauga -5'
26038 5' -52.8 NC_005342.2 + 32779 0.66 0.819971
Target:  5'- uGACcgGCCUGC--UGCCGGcCGUGCg -3'
miRNA:   3'- gUUGa-UGGGCGuuGCGGUCaGCAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.