miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26038 5' -52.8 NC_005342.2 + 47108 0.74 0.366056
Target:  5'- gCAGCUGCCgccaGC-GCGCCAGUCGU-Cg -3'
miRNA:   3'- -GUUGAUGGg---CGuUGCGGUCAGCAuGa -5'
26038 5' -52.8 NC_005342.2 + 37640 0.66 0.800544
Target:  5'- aAACUGCCUGCGuCGUgGGaaGUGCa -3'
miRNA:   3'- gUUGAUGGGCGUuGCGgUCagCAUGa -5'
26038 5' -52.8 NC_005342.2 + 44596 0.66 0.819971
Target:  5'- aCAAcCUGCCCGacucgcuGCGCCAGcugaUCGaGCUg -3'
miRNA:   3'- -GUU-GAUGGGCgu-----UGCGGUC----AGCaUGA- -5'
26038 5' -52.8 NC_005342.2 + 37710 0.66 0.819971
Target:  5'- -cACUGCCCGCGuCGCuCGGcuuccaGUGCg -3'
miRNA:   3'- guUGAUGGGCGUuGCG-GUCag----CAUGa -5'
26038 5' -52.8 NC_005342.2 + 47699 0.69 0.62645
Target:  5'- aAGCUGCUCGgcGCGCUGGUCGUcgGCg -3'
miRNA:   3'- gUUGAUGGGCguUGCGGUCAGCA--UGa -5'
26038 5' -52.8 NC_005342.2 + 43121 0.69 0.636651
Target:  5'- gCAGCcGCCCGCGcaggcagACGCUcgGGUCGgGCUg -3'
miRNA:   3'- -GUUGaUGGGCGU-------UGCGG--UCAGCaUGA- -5'
26038 5' -52.8 NC_005342.2 + 23162 0.68 0.682956
Target:  5'- ----cGCCCGUcACGUCGGUCGgUGCg -3'
miRNA:   3'- guugaUGGGCGuUGCGGUCAGC-AUGa -5'
26038 5' -52.8 NC_005342.2 + 42379 0.68 0.705281
Target:  5'- gAGCaGCCCGCAacaGCGCCGaUCGU-CUc -3'
miRNA:   3'- gUUGaUGGGCGU---UGCGGUcAGCAuGA- -5'
26038 5' -52.8 NC_005342.2 + 40932 0.75 0.315359
Target:  5'- gGGCUACCUGU--CGCCGGUCGUGu- -3'
miRNA:   3'- gUUGAUGGGCGuuGCGGUCAGCAUga -5'
26038 5' -52.8 NC_005342.2 + 7424 0.67 0.738167
Target:  5'- aGACgGCCCG--ACGCCGuGUCGUAUUc -3'
miRNA:   3'- gUUGaUGGGCguUGCGGU-CAGCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 2162 0.67 0.727301
Target:  5'- --uUUGCCCGaCAGCuuGCC-GUCGUACg -3'
miRNA:   3'- guuGAUGGGC-GUUG--CGGuCAGCAUGa -5'
26038 5' -52.8 NC_005342.2 + 19423 0.7 0.547814
Target:  5'- -cGCUACCCGCGACGuUCAcgcgCGUGCc -3'
miRNA:   3'- guUGAUGGGCGUUGC-GGUca--GCAUGa -5'
26038 5' -52.8 NC_005342.2 + 35793 0.67 0.748919
Target:  5'- gAGCUgGCCCGUGacgcggcgcugcGCGCCAGccaCGUACg -3'
miRNA:   3'- gUUGA-UGGGCGU------------UGCGGUCa--GCAUGa -5'
26038 5' -52.8 NC_005342.2 + 11664 0.7 0.57006
Target:  5'- gAACaUAUCCgucgacGCAGCGCCGGgcggCGUGCUg -3'
miRNA:   3'- gUUG-AUGGG------CGUUGCGGUCa---GCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 31040 0.68 0.705281
Target:  5'- aCGGC-GCCCGCAAUGCCGG-CcaGCUu -3'
miRNA:   3'- -GUUGaUGGGCGUUGCGGUCaGcaUGA- -5'
26038 5' -52.8 NC_005342.2 + 47231 0.66 0.789535
Target:  5'- gCGACUGCCgCGCugaacgaGGCGCCGGcCG-GCg -3'
miRNA:   3'- -GUUGAUGG-GCG-------UUGCGGUCaGCaUGa -5'
26038 5' -52.8 NC_005342.2 + 26812 0.66 0.819971
Target:  5'- cCGACggcccgGCCUGCAGCGUC-GUagcgaGUGCUg -3'
miRNA:   3'- -GUUGa-----UGGGCGUUGCGGuCAg----CAUGA- -5'
26038 5' -52.8 NC_005342.2 + 18167 0.7 0.57006
Target:  5'- cCGAUUGCCgGCGugccgggugauGCGCUcGUCGUGCg -3'
miRNA:   3'- -GUUGAUGGgCGU-----------UGCGGuCAGCAUGa -5'
26038 5' -52.8 NC_005342.2 + 19702 0.68 0.660427
Target:  5'- -uGCUGCUCGCGugcucgGCGCUGGUggCGUGCa -3'
miRNA:   3'- guUGAUGGGCGU------UGCGGUCA--GCAUGa -5'
26038 5' -52.8 NC_005342.2 + 28469 0.74 0.357227
Target:  5'- gCAACUGCCCG-AGCGCCGcGUCG-ACc -3'
miRNA:   3'- -GUUGAUGGGCgUUGCGGU-CAGCaUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.