miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26038 5' -52.8 NC_005342.2 + 495 0.66 0.809384
Target:  5'- gCGACgUGCCgGCGagcgugaACGCUucGUCGUACUu -3'
miRNA:   3'- -GUUG-AUGGgCGU-------UGCGGu-CAGCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 2162 0.67 0.727301
Target:  5'- --uUUGCCCGaCAGCuuGCC-GUCGUACg -3'
miRNA:   3'- guuGAUGGGC-GUUG--CGGuCAGCAUGa -5'
26038 5' -52.8 NC_005342.2 + 2331 0.66 0.810357
Target:  5'- cCAGCUcggcaagcACCUcgaGCAGCGCCucGUCGUAg- -3'
miRNA:   3'- -GUUGA--------UGGG---CGUUGCGGu-CAGCAUga -5'
26038 5' -52.8 NC_005342.2 + 2729 0.69 0.637785
Target:  5'- gGGCgcCCCGCc-CGCCAGUUGUAg- -3'
miRNA:   3'- gUUGauGGGCGuuGCGGUCAGCAUga -5'
26038 5' -52.8 NC_005342.2 + 6409 0.7 0.558905
Target:  5'- cCGACcGCUCGCGgccggGCGCC-GUCGUGCc -3'
miRNA:   3'- -GUUGaUGGGCGU-----UGCGGuCAGCAUGa -5'
26038 5' -52.8 NC_005342.2 + 6802 0.67 0.767948
Target:  5'- cCGACUcGCCCGCGucgagcaGCGCCuGUucgaucaugugcgCGUGCUc -3'
miRNA:   3'- -GUUGA-UGGGCGU-------UGCGGuCA-------------GCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 7424 0.67 0.738167
Target:  5'- aGACgGCCCG--ACGCCGuGUCGUAUUc -3'
miRNA:   3'- gUUGaUGGGCguUGCGGU-CAGCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 11664 0.7 0.57006
Target:  5'- gAACaUAUCCgucgacGCAGCGCCGGgcggCGUGCUg -3'
miRNA:   3'- gUUG-AUGGG------CGUUGCGGUCa---GCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 13075 0.66 0.819971
Target:  5'- gCAACUGCCgGCGAUGgCGGUgCGa--- -3'
miRNA:   3'- -GUUGAUGGgCGUUGCgGUCA-GCauga -5'
26038 5' -52.8 NC_005342.2 + 15858 0.67 0.738167
Target:  5'- cCGAgaACCCcgacGCGGCGCUgaacGUCGUGCUg -3'
miRNA:   3'- -GUUgaUGGG----CGUUGCGGu---CAGCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 18167 0.7 0.57006
Target:  5'- cCGAUUGCCgGCGugccgggugauGCGCUcGUCGUGCg -3'
miRNA:   3'- -GUUGAUGGgCGU-----------UGCGGuCAGCAUGa -5'
26038 5' -52.8 NC_005342.2 + 19423 0.7 0.547814
Target:  5'- -cGCUACCCGCGACGuUCAcgcgCGUGCc -3'
miRNA:   3'- guUGAUGGGCGUUGC-GGUca--GCAUGa -5'
26038 5' -52.8 NC_005342.2 + 19510 0.66 0.780371
Target:  5'- uGGCcgACCUGCGuuucuacggcAUGCCggaAGUCGUGCUg -3'
miRNA:   3'- gUUGa-UGGGCGU----------UGCGG---UCAGCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 19702 0.68 0.660427
Target:  5'- -uGCUGCUCGCGugcucgGCGCUGGUggCGUGCa -3'
miRNA:   3'- guUGAUGGGCGU------UGCGGUCA--GCAUGa -5'
26038 5' -52.8 NC_005342.2 + 20515 0.72 0.441893
Target:  5'- gAACUACCCGaauGGCGCCuGGUCG-ACa -3'
miRNA:   3'- gUUGAUGGGCg--UUGCGG-UCAGCaUGa -5'
26038 5' -52.8 NC_005342.2 + 22230 0.66 0.800544
Target:  5'- cCGACUgGCCUGCAGCugGCCGG-CGaGCa -3'
miRNA:   3'- -GUUGA-UGGGCGUUG--CGGUCaGCaUGa -5'
26038 5' -52.8 NC_005342.2 + 23162 0.68 0.682956
Target:  5'- ----cGCCCGUcACGUCGGUCGgUGCg -3'
miRNA:   3'- guugaUGGGCGuUGCGGUCAGC-AUGa -5'
26038 5' -52.8 NC_005342.2 + 26812 0.66 0.819971
Target:  5'- cCGACggcccgGCCUGCAGCGUC-GUagcgaGUGCUg -3'
miRNA:   3'- -GUUGa-----UGGGCGUUGCGGuCAg----CAUGA- -5'
26038 5' -52.8 NC_005342.2 + 28469 0.74 0.357227
Target:  5'- gCAACUGCCCG-AGCGCCGcGUCG-ACc -3'
miRNA:   3'- -GUUGAUGGGCgUUGCGGU-CAGCaUGa -5'
26038 5' -52.8 NC_005342.2 + 29355 0.72 0.451985
Target:  5'- -uGCcGCCCGCGccugccGCGCCGGUCGUuuguuGCa -3'
miRNA:   3'- guUGaUGGGCGU------UGCGGUCAGCA-----UGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.