miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2622 3' -58.4 NC_001491.2 + 67572 0.68 0.675133
Target:  5'- cUGGGCCUgGGCGUuugGGguGaGAGCCUg -3'
miRNA:   3'- -ACUCGGGgUCGUA---UCguCaCUCGGGg -5'
2622 3' -58.4 NC_001491.2 + 59166 0.74 0.339008
Target:  5'- gUGAGCUCUAaacGCcucgcGGUGGUGAGCCCCg -3'
miRNA:   3'- -ACUCGGGGU---CGua---UCGUCACUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 56598 0.66 0.773261
Target:  5'- -cGGCCCUcGCAguuuUGGUGGcGAGCUCCa -3'
miRNA:   3'- acUCGGGGuCGU----AUCGUCaCUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 53527 0.67 0.744725
Target:  5'- gGGGCgaCCCgagAGCGcGGUAGUGAcGCCUCg -3'
miRNA:   3'- aCUCG--GGG---UCGUaUCGUCACU-CGGGG- -5'
2622 3' -58.4 NC_001491.2 + 48832 0.66 0.773261
Target:  5'- cGAGgCCCAG---GGCccugGGUGGGCCuCCa -3'
miRNA:   3'- aCUCgGGGUCguaUCG----UCACUCGG-GG- -5'
2622 3' -58.4 NC_001491.2 + 47127 0.71 0.494531
Target:  5'- --cGCCCCAGCA-GGCGcuccaGAGCCCUg -3'
miRNA:   3'- acuCGGGGUCGUaUCGUca---CUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 41163 0.67 0.705346
Target:  5'- -uAGCCCUAGCGuUAGCGcu-AGCCCUa -3'
miRNA:   3'- acUCGGGGUCGU-AUCGUcacUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 39447 0.73 0.386774
Target:  5'- cGGGCCCCAGUcgccUGGguGcuGGCCCCc -3'
miRNA:   3'- aCUCGGGGUCGu---AUCguCacUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 35958 0.8 0.141399
Target:  5'- cGAGCCCCGGCGUGGCcca-GGCCCUc -3'
miRNA:   3'- aCUCGGGGUCGUAUCGucacUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 34534 0.66 0.754347
Target:  5'- cGGGCCCUGGgaccCAUGcCAGccgaGGGCCCCg -3'
miRNA:   3'- aCUCGGGGUC----GUAUcGUCa---CUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 34395 0.69 0.592614
Target:  5'- cGAGCCCCuggagccGGCGgccCAGgccgGAGCCUCg -3'
miRNA:   3'- aCUCGGGG-------UCGUaucGUCa---CUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 34015 0.67 0.741818
Target:  5'- -cGGUCCCAGCAgcccUcaucguccucgcccGGCGGcGAGCCCUu -3'
miRNA:   3'- acUCGGGGUCGU----A--------------UCGUCaCUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 32785 0.75 0.316781
Target:  5'- -cGGCCCCGGCGgcGGCuucGUGcGCCCCg -3'
miRNA:   3'- acUCGGGGUCGUa-UCGu--CACuCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 31824 0.69 0.613987
Target:  5'- cGAGCCCCgcggagggaaGGCGaAGCGGUc-GCCCUc -3'
miRNA:   3'- aCUCGGGG----------UCGUaUCGUCAcuCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 11283 0.67 0.705346
Target:  5'- aGGGCgCCAGCGUA-CAGggGAGUguaCCCa -3'
miRNA:   3'- aCUCGgGGUCGUAUcGUCa-CUCG---GGG- -5'
2622 3' -58.4 NC_001491.2 + 9583 0.68 0.644605
Target:  5'- cGAGCCCCGGCugggggAGCGGU-AGCg-- -3'
miRNA:   3'- aCUCGGGGUCGua----UCGUCAcUCGggg -5'
2622 3' -58.4 NC_001491.2 + 5286 0.71 0.494531
Target:  5'- gGAGUggaccaucUUCAGCAUcGCGGcGAGCCCCg -3'
miRNA:   3'- aCUCG--------GGGUCGUAuCGUCaCUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 4660 0.66 0.773261
Target:  5'- aGGGCUCCGGCccGGCGGaGAagccauCCCCg -3'
miRNA:   3'- aCUCGGGGUCGuaUCGUCaCUc-----GGGG- -5'
2622 3' -58.4 NC_001491.2 + 3428 0.71 0.466218
Target:  5'- gGAGCCCaGGCGgugGGUAGggucaGAGUCCCc -3'
miRNA:   3'- aCUCGGGgUCGUa--UCGUCa----CUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 3023 0.74 0.354443
Target:  5'- cUGGGUggCCCGGCAgcaggUGGCGGUcGuAGCCCCg -3'
miRNA:   3'- -ACUCG--GGGUCGU-----AUCGUCA-C-UCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.