Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2622 | 3' | -58.4 | NC_001491.2 | + | 149673 | 0.8 | 0.148837 |
Target: 5'- ------nCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- acucgggGUCGUAUCGUCACUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 149648 | 1.12 | 0.000873 |
Target: 5'- gUGAGCCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -ACUCGGGGUCGUAUCGUCACUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 149612 | 1.12 | 0.000873 |
Target: 5'- gUGAGCCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -ACUCGGGGUCGUAUCGUCACUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 149576 | 1.12 | 0.000873 |
Target: 5'- gUGAGCCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -ACUCGGGGUCGUAUCGUCACUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 149540 | 1.12 | 0.000873 |
Target: 5'- gUGAGCCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -ACUCGGGGUCGUAUCGUCACUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 149504 | 1.12 | 0.000873 |
Target: 5'- gUGAGCCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -ACUCGGGGUCGUAUCGUCACUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 149468 | 1.12 | 0.000873 |
Target: 5'- gUGAGCCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -ACUCGGGGUCGUAUCGUCACUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 149432 | 1.12 | 0.000873 |
Target: 5'- gUGAGCCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -ACUCGGGGUCGUAUCGUCACUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 149396 | 1.12 | 0.000873 |
Target: 5'- gUGAGCCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -ACUCGGGGUCGUAUCGUCACUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 149360 | 1.12 | 0.000873 |
Target: 5'- gUGAGCCCCAGCAUAGCAGUGAGCCCCa -3' miRNA: 3'- -ACUCGGGGUCGUAUCGUCACUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 148891 | 0.71 | 0.475565 |
Target: 5'- uUGGGaaaCCCAGCGaguugggaaaucUAGUGGgcUGGGCCCCa -3' miRNA: 3'- -ACUCg--GGGUCGU------------AUCGUC--ACUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 146203 | 0.73 | 0.403652 |
Target: 5'- -uGGCCaCCgAGCAUAGCGuGUGuagcGCCCCg -3' miRNA: 3'- acUCGG-GG-UCGUAUCGU-CACu---CGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 124605 | 0.67 | 0.715306 |
Target: 5'- -cGGCCugcuaauucacaCCAGCGUcGGCGGUGAGCagguauacauaCCCa -3' miRNA: 3'- acUCGG------------GGUCGUA-UCGUCACUCG-----------GGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 115429 | 0.72 | 0.43697 |
Target: 5'- cGGGCUCCAGCGUGGauaucguugucGUGuAGUCCCg -3' miRNA: 3'- aCUCGGGGUCGUAUCgu---------CAC-UCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 114252 | 0.68 | 0.685251 |
Target: 5'- cUGGGCCCUGGCcagcugcguGUGGCGuGUGAGCa-- -3' miRNA: 3'- -ACUCGGGGUCG---------UAUCGU-CACUCGggg -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 105131 | 0.66 | 0.800669 |
Target: 5'- gGGGCCgCGGCGggggucucuacGGCAGgcuuuggGGGCUCCu -3' miRNA: 3'- aCUCGGgGUCGUa----------UCGUCa------CUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 91044 | 0.71 | 0.504143 |
Target: 5'- cUGuAGCCUUagAGCAUGucaaaGGUGAGCCCCg -3' miRNA: 3'- -AC-UCGGGG--UCGUAUcg---UCACUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 87001 | 0.71 | 0.475565 |
Target: 5'- aUGAGCUCCAGCuguuUGGCGGUGAcGUUg- -3' miRNA: 3'- -ACUCGGGGUCGu---AUCGUCACU-CGGgg -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 83292 | 0.67 | 0.748586 |
Target: 5'- --uGcCCCCAGCuggguGCGGUuuuagccacggcugcGGGCCCCg -3' miRNA: 3'- acuC-GGGGUCGuau--CGUCA---------------CUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 70191 | 0.67 | 0.715306 |
Target: 5'- cUGAGCCCUGGCccuGCccauGUcGGCCCUg -3' miRNA: 3'- -ACUCGGGGUCGuauCGu---CAcUCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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