Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2622 | 3' | -58.4 | NC_001491.2 | + | 1356 | 0.73 | 0.362344 |
Target: 5'- cGGGCUCCGGCAggcacAGCuccGUG-GCCCCc -3' miRNA: 3'- aCUCGGGGUCGUa----UCGu--CACuCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 1441 | 0.68 | 0.654802 |
Target: 5'- cGGGgCUCGGC--GGCGGgGAGCCUCg -3' miRNA: 3'- aCUCgGGGUCGuaUCGUCaCUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 2251 | 0.72 | 0.438767 |
Target: 5'- aGGGCCgCCAGCAgcGCcGaGAGUCCCc -3' miRNA: 3'- aCUCGG-GGUCGUauCGuCaCUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 2688 | 0.75 | 0.309621 |
Target: 5'- gGGGCCCuCGGC-UGGCA-UGGGUCCCa -3' miRNA: 3'- aCUCGGG-GUCGuAUCGUcACUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 2835 | 0.67 | 0.725195 |
Target: 5'- cUGGGCCgCCGGCuccaggGGCucgGAGCgCCg -3' miRNA: 3'- -ACUCGG-GGUCGua----UCGucaCUCGgGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 3023 | 0.74 | 0.354443 |
Target: 5'- cUGGGUggCCCGGCAgcaggUGGCGGUcGuAGCCCCg -3' miRNA: 3'- -ACUCG--GGGUCGU-----AUCGUCA-C-UCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 3428 | 0.71 | 0.466218 |
Target: 5'- gGAGCCCaGGCGgugGGUAGggucaGAGUCCCc -3' miRNA: 3'- aCUCGGGgUCGUa--UCGUCa----CUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 4660 | 0.66 | 0.773261 |
Target: 5'- aGGGCUCCGGCccGGCGGaGAagccauCCCCg -3' miRNA: 3'- aCUCGGGGUCGuaUCGUCaCUc-----GGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 5286 | 0.71 | 0.494531 |
Target: 5'- gGAGUggaccaucUUCAGCAUcGCGGcGAGCCCCg -3' miRNA: 3'- aCUCG--------GGGUCGUAuCGUCaCUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 9583 | 0.68 | 0.644605 |
Target: 5'- cGAGCCCCGGCugggggAGCGGU-AGCg-- -3' miRNA: 3'- aCUCGGGGUCGua----UCGUCAcUCGggg -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 11283 | 0.67 | 0.705346 |
Target: 5'- aGGGCgCCAGCGUA-CAGggGAGUguaCCCa -3' miRNA: 3'- aCUCGgGGUCGUAUcGUCa-CUCG---GGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 31824 | 0.69 | 0.613987 |
Target: 5'- cGAGCCCCgcggagggaaGGCGaAGCGGUc-GCCCUc -3' miRNA: 3'- aCUCGGGG----------UCGUaUCGUCAcuCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 32785 | 0.75 | 0.316781 |
Target: 5'- -cGGCCCCGGCGgcGGCuucGUGcGCCCCg -3' miRNA: 3'- acUCGGGGUCGUa-UCGu--CACuCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 34015 | 0.67 | 0.741818 |
Target: 5'- -cGGUCCCAGCAgcccUcaucguccucgcccGGCGGcGAGCCCUu -3' miRNA: 3'- acUCGGGGUCGU----A--------------UCGUCaCUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 34395 | 0.69 | 0.592614 |
Target: 5'- cGAGCCCCuggagccGGCGgccCAGgccgGAGCCUCg -3' miRNA: 3'- aCUCGGGG-------UCGUaucGUCa---CUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 34534 | 0.66 | 0.754347 |
Target: 5'- cGGGCCCUGGgaccCAUGcCAGccgaGGGCCCCg -3' miRNA: 3'- aCUCGGGGUC----GUAUcGUCa---CUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 35958 | 0.8 | 0.141399 |
Target: 5'- cGAGCCCCGGCGUGGCcca-GGCCCUc -3' miRNA: 3'- aCUCGGGGUCGUAUCGucacUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 39447 | 0.73 | 0.386774 |
Target: 5'- cGGGCCCCAGUcgccUGGguGcuGGCCCCc -3' miRNA: 3'- aCUCGGGGUCGu---AUCguCacUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 41163 | 0.67 | 0.705346 |
Target: 5'- -uAGCCCUAGCGuUAGCGcu-AGCCCUa -3' miRNA: 3'- acUCGGGGUCGU-AUCGUcacUCGGGG- -5' |
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2622 | 3' | -58.4 | NC_001491.2 | + | 47127 | 0.71 | 0.494531 |
Target: 5'- --cGCCCCAGCA-GGCGcuccaGAGCCCUg -3' miRNA: 3'- acuCGGGGUCGUaUCGUca---CUCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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