Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2622 | 5' | -57.4 | NC_001491.2 | + | 149359 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149431 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149467 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149503 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149539 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149575 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149611 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149647 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149395 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 35958 | 0.8 | 0.170011 |
Target: 5'- -cGAGCCCCGGCGUGGCcca-GGCCCu -3' miRNA: 3'- caCUCGGGGUCGUAUCGucacUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149672 | 0.8 | 0.174389 |
Target: 5'- ------nCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- cacucggGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 87001 | 0.73 | 0.408376 |
Target: 5'- aUGAGCUCCAGCuguuUGGCGGUGAcGUUg -3' miRNA: 3'- cACUCGGGGUCGu---AUCGUCACU-CGGg -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 59165 | 0.71 | 0.510378 |
Target: 5'- gGUGAGCUCUAaacGCcucgcGGUGGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGU---CGua---UCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 47121 | 0.7 | 0.580496 |
Target: 5'- gGUGcacGCCCCAGCA-GGCGcuccaGAGCCCu -3' miRNA: 3'- -CACu--CGGGGUCGUaUCGUca---CUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 114252 | 0.7 | 0.611232 |
Target: 5'- cUGGGCCCUGGCcagcugcguGUGGCGuGUGAGCa- -3' miRNA: 3'- cACUCGGGGUCG---------UAUCGU-CACUCGgg -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 9583 | 0.7 | 0.621519 |
Target: 5'- -cGAGCCCCGGCugggggAGCGGU-AGCg- -3' miRNA: 3'- caCUCGGGGUCGua----UCGUCAcUCGgg -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 67572 | 0.69 | 0.642109 |
Target: 5'- cUGGGCCUgGGCGUuugGGguGaGAGCCUg -3' miRNA: 3'- cACUCGGGgUCGUA---UCguCaCUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 1356 | 0.69 | 0.652397 |
Target: 5'- -cGGGCUCCGGCAggcacAGCuccGUG-GCCCc -3' miRNA: 3'- caCUCGGGGUCGUa----UCGu--CACuCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 3026 | 0.69 | 0.652397 |
Target: 5'- gGUG-GCCCggCAGCAggUGGCGGUcGuAGCCCc -3' miRNA: 3'- -CACuCGGG--GUCGU--AUCGUCA-C-UCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 2688 | 0.69 | 0.672913 |
Target: 5'- -gGGGCCCuCGGC-UGGCA-UGGGUCCc -3' miRNA: 3'- caCUCGGG-GUCGuAUCGUcACUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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