miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2622 5' -57.4 NC_001491.2 + 1356 0.69 0.652397
Target:  5'- -cGGGCUCCGGCAggcacAGCuccGUG-GCCCc -3'
miRNA:   3'- caCUCGGGGUCGUa----UCGu--CACuCGGG- -5'
2622 5' -57.4 NC_001491.2 + 1457 0.67 0.743185
Target:  5'- -gGAGCCUCGGUgaugGGCAGcaccagGGGCUCg -3'
miRNA:   3'- caCUCGGGGUCGua--UCGUCa-----CUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 2191 0.66 0.817418
Target:  5'- -gGGGCCCCGGUccAGUuGccGGCCCa -3'
miRNA:   3'- caCUCGGGGUCGuaUCGuCacUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 2251 0.67 0.743185
Target:  5'- -aGGGCCgCCAGCAgcGCcGaGAGUCCc -3'
miRNA:   3'- caCUCGG-GGUCGUauCGuCaCUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 2688 0.69 0.672913
Target:  5'- -gGGGCCCuCGGC-UGGCA-UGGGUCCc -3'
miRNA:   3'- caCUCGGG-GUCGuAUCGUcACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 2835 0.66 0.834447
Target:  5'- cUGGGCCgCCGGCuccaggGGCucgGAGCgCCg -3'
miRNA:   3'- cACUCGG-GGUCGua----UCGucaCUCG-GG- -5'
2622 5' -57.4 NC_001491.2 + 3026 0.69 0.652397
Target:  5'- gGUG-GCCCggCAGCAggUGGCGGUcGuAGCCCc -3'
miRNA:   3'- -CACuCGGG--GUCGU--AUCGUCA-C-UCGGG- -5'
2622 5' -57.4 NC_001491.2 + 3428 0.67 0.772015
Target:  5'- -gGAGCCCaGGCGgugGGUAGggucaGAGUCCc -3'
miRNA:   3'- caCUCGGGgUCGUa--UCGUCa----CUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 3848 0.66 0.808644
Target:  5'- cUGGGCCggguagCCGGCcacggcGGCgAGUGAGUCCg -3'
miRNA:   3'- cACUCGG------GGUCGua----UCG-UCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 4660 0.66 0.799708
Target:  5'- -aGGGCUCCGGCccGGCGGaGaAGCCa -3'
miRNA:   3'- caCUCGGGGUCGuaUCGUCaC-UCGGg -5'
2622 5' -57.4 NC_001491.2 + 4873 0.67 0.781384
Target:  5'- gGUGgcGGCCCCAGCGgccgGGCgauccccuccggAGgacGGCCCg -3'
miRNA:   3'- -CAC--UCGGGGUCGUa---UCG------------UCac-UCGGG- -5'
2622 5' -57.4 NC_001491.2 + 9583 0.7 0.621519
Target:  5'- -cGAGCCCCGGCugggggAGCGGU-AGCg- -3'
miRNA:   3'- caCUCGGGGUCGua----UCGUCAcUCGgg -5'
2622 5' -57.4 NC_001491.2 + 10459 0.66 0.816548
Target:  5'- cUGGGCCgcgcuacUCAaCAUGGCGGgcgccGAGCCCg -3'
miRNA:   3'- cACUCGG-------GGUcGUAUCGUCa----CUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 31824 0.68 0.693296
Target:  5'- -cGAGCCCCgcggagggaaGGCGaAGCGGUc-GCCCu -3'
miRNA:   3'- caCUCGGGG----------UCGUaUCGUCAcuCGGG- -5'
2622 5' -57.4 NC_001491.2 + 32785 0.68 0.683126
Target:  5'- --cGGCCCCGGCGgcGGCuucGUGcGCCCc -3'
miRNA:   3'- cacUCGGGGUCGUa-UCGu--CACuCGGG- -5'
2622 5' -57.4 NC_001491.2 + 34015 0.66 0.814803
Target:  5'- --cGGUCCCAGCAgcccUcaucguccucgcccGGCGGcGAGCCCu -3'
miRNA:   3'- cacUCGGGGUCGU----A--------------UCGUCaCUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 35805 0.66 0.808644
Target:  5'- -cGAGCCCC-GCG-GGUcgacuGG-GAGCCCg -3'
miRNA:   3'- caCUCGGGGuCGUaUCG-----UCaCUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 35958 0.8 0.170011
Target:  5'- -cGAGCCCCGGCGUGGCcca-GGCCCu -3'
miRNA:   3'- caCUCGGGGUCGUAUCGucacUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 39447 0.68 0.683126
Target:  5'- -cGGGCCCCAGUcgccUGGguGcuGGCCCc -3'
miRNA:   3'- caCUCGGGGUCGu---AUCguCacUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 41163 0.66 0.834447
Target:  5'- --uAGCCCUAGCGUuAGCGcu-AGCCCu -3'
miRNA:   3'- cacUCGGGGUCGUA-UCGUcacUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.