Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2622 | 5' | -57.4 | NC_001491.2 | + | 149672 | 0.8 | 0.174389 |
Target: 5'- ------nCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- cacucggGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149647 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149611 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149575 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149539 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149503 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149467 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149431 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149395 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 149359 | 1.1 | 0.001351 |
Target: 5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3' miRNA: 3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 148891 | 0.66 | 0.817418 |
Target: 5'- uUGGGaaaCCCAGCGaguugggaaaucUAGUGGgcUGGGCCCc -3' miRNA: 3'- cACUCg--GGGUCGU------------AUCGUC--ACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 146203 | 0.67 | 0.790618 |
Target: 5'- --uGGCCaCCgAGCAUAGCGuGUGuagcGCCCc -3' miRNA: 3'- cacUCGG-GG-UCGUAUCGU-CACu---CGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 134604 | 0.67 | 0.790618 |
Target: 5'- -gGGGUCCCu-CGaAGCGGUGcGCCCg -3' miRNA: 3'- caCUCGGGGucGUaUCGUCACuCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 124605 | 0.66 | 0.842686 |
Target: 5'- --cGGCCugcuaauucacaCCAGCGUcGGCGGUGAGCa- -3' miRNA: 3'- cacUCGG------------GGUCGUA-UCGUCACUCGgg -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 115429 | 0.66 | 0.824315 |
Target: 5'- -cGGGCUCCAGCGUGGauaucguugucGUGuAGUCCc -3' miRNA: 3'- caCUCGGGGUCGUAUCgu---------CAC-UCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 114252 | 0.7 | 0.611232 |
Target: 5'- cUGGGCCCUGGCcagcugcguGUGGCGuGUGAGCa- -3' miRNA: 3'- cACUCGGGGUCG---------UAUCGU-CACUCGgg -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 111048 | 0.67 | 0.743185 |
Target: 5'- uGUGcGCCUCAG-AUAGCAGcgcuGCCCa -3' miRNA: 3'- -CACuCGGGGUCgUAUCGUCacu-CGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 91044 | 0.66 | 0.842686 |
Target: 5'- cUGuAGCCUUagAGCAUGucaaaGGUGAGCCCc -3' miRNA: 3'- cAC-UCGGGG--UCGUAUcg---UCACUCGGG- -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 87001 | 0.73 | 0.408376 |
Target: 5'- aUGAGCUCCAGCuguuUGGCGGUGAcGUUg -3' miRNA: 3'- cACUCGGGGUCGu---AUCGUCACU-CGGg -5' |
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2622 | 5' | -57.4 | NC_001491.2 | + | 70191 | 0.66 | 0.799708 |
Target: 5'- cUGAGCCCUGGCccuGCccauGUcGGCCCu -3' miRNA: 3'- cACUCGGGGUCGuauCGu---CAcUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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