miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2622 5' -57.4 NC_001491.2 + 47121 0.7 0.580496
Target:  5'- gGUGcacGCCCCAGCA-GGCGcuccaGAGCCCu -3'
miRNA:   3'- -CACu--CGGGGUCGUaUCGUca---CUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 59165 0.71 0.510378
Target:  5'- gGUGAGCUCUAaacGCcucgcGGUGGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGU---CGua---UCGUCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 67572 0.69 0.642109
Target:  5'- cUGGGCCUgGGCGUuugGGguGaGAGCCUg -3'
miRNA:   3'- cACUCGGGgUCGUA---UCguCaCUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 70191 0.66 0.799708
Target:  5'- cUGAGCCCUGGCccuGCccauGUcGGCCCu -3'
miRNA:   3'- cACUCGGGGUCGuauCGu---CAcUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 87001 0.73 0.408376
Target:  5'- aUGAGCUCCAGCuguuUGGCGGUGAcGUUg -3'
miRNA:   3'- cACUCGGGGUCGu---AUCGUCACU-CGGg -5'
2622 5' -57.4 NC_001491.2 + 91044 0.66 0.842686
Target:  5'- cUGuAGCCUUagAGCAUGucaaaGGUGAGCCCc -3'
miRNA:   3'- cAC-UCGGGG--UCGUAUcg---UCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 111048 0.67 0.743185
Target:  5'- uGUGcGCCUCAG-AUAGCAGcgcuGCCCa -3'
miRNA:   3'- -CACuCGGGGUCgUAUCGUCacu-CGGG- -5'
2622 5' -57.4 NC_001491.2 + 114252 0.7 0.611232
Target:  5'- cUGGGCCCUGGCcagcugcguGUGGCGuGUGAGCa- -3'
miRNA:   3'- cACUCGGGGUCG---------UAUCGU-CACUCGgg -5'
2622 5' -57.4 NC_001491.2 + 115429 0.66 0.824315
Target:  5'- -cGGGCUCCAGCGUGGauaucguugucGUGuAGUCCc -3'
miRNA:   3'- caCUCGGGGUCGUAUCgu---------CAC-UCGGG- -5'
2622 5' -57.4 NC_001491.2 + 124605 0.66 0.842686
Target:  5'- --cGGCCugcuaauucacaCCAGCGUcGGCGGUGAGCa- -3'
miRNA:   3'- cacUCGG------------GGUCGUA-UCGUCACUCGgg -5'
2622 5' -57.4 NC_001491.2 + 134604 0.67 0.790618
Target:  5'- -gGGGUCCCu-CGaAGCGGUGcGCCCg -3'
miRNA:   3'- caCUCGGGGucGUaUCGUCACuCGGG- -5'
2622 5' -57.4 NC_001491.2 + 146203 0.67 0.790618
Target:  5'- --uGGCCaCCgAGCAUAGCGuGUGuagcGCCCc -3'
miRNA:   3'- cacUCGG-GG-UCGUAUCGU-CACu---CGGG- -5'
2622 5' -57.4 NC_001491.2 + 148891 0.66 0.817418
Target:  5'- uUGGGaaaCCCAGCGaguugggaaaucUAGUGGgcUGGGCCCc -3'
miRNA:   3'- cACUCg--GGGUCGU------------AUCGUC--ACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 149359 1.1 0.001351
Target:  5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 149395 1.1 0.001351
Target:  5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 149431 1.1 0.001351
Target:  5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 149467 1.1 0.001351
Target:  5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 149503 1.1 0.001351
Target:  5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 149539 1.1 0.001351
Target:  5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 149575 1.1 0.001351
Target:  5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.