miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2622 5' -57.4 NC_001491.2 + 31824 0.68 0.693296
Target:  5'- -cGAGCCCCgcggagggaaGGCGaAGCGGUc-GCCCu -3'
miRNA:   3'- caCUCGGGG----------UCGUaUCGUCAcuCGGG- -5'
2622 5' -57.4 NC_001491.2 + 32785 0.68 0.683126
Target:  5'- --cGGCCCCGGCGgcGGCuucGUGcGCCCc -3'
miRNA:   3'- cacUCGGGGUCGUa-UCGu--CACuCGGG- -5'
2622 5' -57.4 NC_001491.2 + 39447 0.68 0.683126
Target:  5'- -cGGGCCCCAGUcgccUGGguGcuGGCCCc -3'
miRNA:   3'- caCUCGGGGUCGu---AUCguCacUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 2688 0.69 0.672913
Target:  5'- -gGGGCCCuCGGC-UGGCA-UGGGUCCc -3'
miRNA:   3'- caCUCGGG-GUCGuAUCGUcACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 3026 0.69 0.652397
Target:  5'- gGUG-GCCCggCAGCAggUGGCGGUcGuAGCCCc -3'
miRNA:   3'- -CACuCGGG--GUCGU--AUCGUCA-C-UCGGG- -5'
2622 5' -57.4 NC_001491.2 + 1356 0.69 0.652397
Target:  5'- -cGGGCUCCGGCAggcacAGCuccGUG-GCCCc -3'
miRNA:   3'- caCUCGGGGUCGUa----UCGu--CACuCGGG- -5'
2622 5' -57.4 NC_001491.2 + 67572 0.69 0.642109
Target:  5'- cUGGGCCUgGGCGUuugGGguGaGAGCCUg -3'
miRNA:   3'- cACUCGGGgUCGUA---UCguCaCUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 9583 0.7 0.621519
Target:  5'- -cGAGCCCCGGCugggggAGCGGU-AGCg- -3'
miRNA:   3'- caCUCGGGGUCGua----UCGUCAcUCGgg -5'
2622 5' -57.4 NC_001491.2 + 114252 0.7 0.611232
Target:  5'- cUGGGCCCUGGCcagcugcguGUGGCGuGUGAGCa- -3'
miRNA:   3'- cACUCGGGGUCG---------UAUCGU-CACUCGgg -5'
2622 5' -57.4 NC_001491.2 + 47121 0.7 0.580496
Target:  5'- gGUGcacGCCCCAGCA-GGCGcuccaGAGCCCu -3'
miRNA:   3'- -CACu--CGGGGUCGUaUCGUca---CUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 59165 0.71 0.510378
Target:  5'- gGUGAGCUCUAaacGCcucgcGGUGGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGU---CGua---UCGUCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 87001 0.73 0.408376
Target:  5'- aUGAGCUCCAGCuguuUGGCGGUGAcGUUg -3'
miRNA:   3'- cACUCGGGGUCGu---AUCGUCACU-CGGg -5'
2622 5' -57.4 NC_001491.2 + 149672 0.8 0.174389
Target:  5'- ------nCCAGCAUAGCAGUGAGCCCc -3'
miRNA:   3'- cacucggGGUCGUAUCGUCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 35958 0.8 0.170011
Target:  5'- -cGAGCCCCGGCGUGGCcca-GGCCCu -3'
miRNA:   3'- caCUCGGGGUCGUAUCGucacUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 149359 1.1 0.001351
Target:  5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 149611 1.1 0.001351
Target:  5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 149575 1.1 0.001351
Target:  5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 149539 1.1 0.001351
Target:  5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 149503 1.1 0.001351
Target:  5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5'
2622 5' -57.4 NC_001491.2 + 149467 1.1 0.001351
Target:  5'- aGUGAGCCCCAGCAUAGCAGUGAGCCCc -3'
miRNA:   3'- -CACUCGGGGUCGUAUCGUCACUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.