miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2623 3' -60.7 NC_001491.2 + 105130 0.7 0.435583
Target:  5'- cGGGGCCgCGGCGggggucucuacGGCAGgcuuuggGGGCUCCu -3'
miRNA:   3'- uCCCCGG-GUCGUa----------UCGUCa------CUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 8665 0.71 0.408761
Target:  5'- cGGGGGCCaggGGCGUucuGCGccccgccGUGGcGCCCCg -3'
miRNA:   3'- -UCCCCGGg--UCGUAu--CGU-------CACU-CGGGG- -5'
2623 3' -60.7 NC_001491.2 + 134602 0.71 0.40117
Target:  5'- uGGGGGUCCcuCGaAGCGGUGcGCCCg -3'
miRNA:   3'- -UCCCCGGGucGUaUCGUCACuCGGGg -5'
2623 3' -60.7 NC_001491.2 + 88428 0.71 0.376523
Target:  5'- gGGGGGCUUGGCGUGGUGGguacGGCUCUa -3'
miRNA:   3'- -UCCCCGGGUCGUAUCGUCac--UCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 1480 0.72 0.345286
Target:  5'- cAGGGGCUCGGCcucGGCGucGGGCUCCa -3'
miRNA:   3'- -UCCCCGGGUCGua-UCGUcaCUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 34368 0.72 0.337773
Target:  5'- cAGGGGCaagagCGGCA-AGCGGcgcuccGAGCCCCu -3'
miRNA:   3'- -UCCCCGg----GUCGUaUCGUCa-----CUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 2687 0.76 0.197424
Target:  5'- cGGGGCCCucGGC-UGGCA-UGGGUCCCa -3'
miRNA:   3'- uCCCCGGG--UCGuAUCGUcACUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 1441 0.78 0.142907
Target:  5'- cGGGGCUCGGC--GGCGGgGAGCCUCg -3'
miRNA:   3'- uCCCCGGGUCGuaUCGUCaCUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 3024 0.81 0.085441
Target:  5'- uGGGuGGCCCGGCAgcaggUGGCGGUcGuAGCCCCg -3'
miRNA:   3'- -UCC-CCGGGUCGU-----AUCGUCA-C-UCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 149376 0.87 0.031994
Target:  5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 149412 0.87 0.031994
Target:  5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 149448 0.87 0.031994
Target:  5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 149484 0.87 0.031994
Target:  5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 149520 0.87 0.031994
Target:  5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 149556 0.87 0.031994
Target:  5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 149592 0.87 0.031994
Target:  5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 149628 0.87 0.031994
Target:  5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 149664 0.87 0.031994
Target:  5'- cAGuGaGcCCCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- -UCcC-C-GGGUCGUAUCGUCACUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 149342 1.11 0.000603
Target:  5'- aAGGGGCCCAGCAUAGCAGUGAGCCCCa -3'
miRNA:   3'- -UCCCCGGGUCGUAUCGUCACUCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.