miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2624 3' -65.3 NC_001491.2 + 3326 0.66 0.516349
Target:  5'- gGCCgaggCCCGgGCCCgGgCCCCCUCGg-- -3'
miRNA:   3'- gCGG----GGGUaUGGGgC-GGGGGAGCgag -5'
2624 3' -65.3 NC_001491.2 + 35382 0.66 0.498067
Target:  5'- gCGCgCCUGUACCCggacucugCGCCCCUgaggcugugcCGCUCc -3'
miRNA:   3'- -GCGgGGGUAUGGG--------GCGGGGGa---------GCGAG- -5'
2624 3' -65.3 NC_001491.2 + 91205 0.66 0.498067
Target:  5'- -aCCCaCgCAUGCCCCgaagucaaacGCUCCCUCGC-Cg -3'
miRNA:   3'- gcGGG-G-GUAUGGGG----------CGGGGGAGCGaG- -5'
2624 3' -65.3 NC_001491.2 + 46070 0.66 0.489035
Target:  5'- aCGCCuCCCGgACCCU--CCCCUCGUcCa -3'
miRNA:   3'- -GCGG-GGGUaUGGGGcgGGGGAGCGaG- -5'
2624 3' -65.3 NC_001491.2 + 32446 0.66 0.489035
Target:  5'- cCGCUCCCAgccGCCCgggaggagGCCUCCUCcCUCc -3'
miRNA:   3'- -GCGGGGGUa--UGGGg-------CGGGGGAGcGAG- -5'
2624 3' -65.3 NC_001491.2 + 33435 0.66 0.480081
Target:  5'- aGCCCgag-GCCCCGgCgCCCUCGgUCc -3'
miRNA:   3'- gCGGGgguaUGGGGCgG-GGGAGCgAG- -5'
2624 3' -65.3 NC_001491.2 + 19572 0.66 0.471207
Target:  5'- -cCCCCCugagggcUACCCCGacgaCCCCCUgCGCg- -3'
miRNA:   3'- gcGGGGGu------AUGGGGC----GGGGGA-GCGag -5'
2624 3' -65.3 NC_001491.2 + 51305 0.66 0.462418
Target:  5'- uCGCCUUCGcgGCUCUGCCggCCC-CGCUCu -3'
miRNA:   3'- -GCGGGGGUa-UGGGGCGG--GGGaGCGAG- -5'
2624 3' -65.3 NC_001491.2 + 121323 0.67 0.453715
Target:  5'- uGCCCCgAUAUCgaGCaCCUgcgCUCGCUCa -3'
miRNA:   3'- gCGGGGgUAUGGggCG-GGG---GAGCGAG- -5'
2624 3' -65.3 NC_001491.2 + 148443 0.67 0.445102
Target:  5'- aCGCCCgCGgccGCUCUGCCCCg-CGUUCc -3'
miRNA:   3'- -GCGGGgGUa--UGGGGCGGGGgaGCGAG- -5'
2624 3' -65.3 NC_001491.2 + 8684 0.67 0.445102
Target:  5'- gCGCCCcgCCGUggcGCCCCGaugugaaCCgCCUCGCg- -3'
miRNA:   3'- -GCGGG--GGUA---UGGGGCg------GG-GGAGCGag -5'
2624 3' -65.3 NC_001491.2 + 35798 0.67 0.434044
Target:  5'- cCGCCgCCGaGCCCCGCgggucgacugggagCCCggguucggcuCUCGCUCc -3'
miRNA:   3'- -GCGGgGGUaUGGGGCG--------------GGG----------GAGCGAG- -5'
2624 3' -65.3 NC_001491.2 + 35642 0.67 0.428156
Target:  5'- gCGCCCCgUGUACCUCGCCUgCggccggCGCg- -3'
miRNA:   3'- -GCGGGG-GUAUGGGGCGGGgGa-----GCGag -5'
2624 3' -65.3 NC_001491.2 + 34099 0.67 0.419827
Target:  5'- cCGCCCCUGUGgcCCaCCGUCCCCgggaaGCa- -3'
miRNA:   3'- -GCGGGGGUAU--GG-GGCGGGGGag---CGag -5'
2624 3' -65.3 NC_001491.2 + 40829 0.68 0.39544
Target:  5'- aGCCCCCcuuggACgaCUGCCCCC-CGCg- -3'
miRNA:   3'- gCGGGGGua---UGg-GGCGGGGGaGCGag -5'
2624 3' -65.3 NC_001491.2 + 40562 0.68 0.39544
Target:  5'- uGCCCCauuCAUGCUaCGCCCCCUCcCa- -3'
miRNA:   3'- gCGGGG---GUAUGGgGCGGGGGAGcGag -5'
2624 3' -65.3 NC_001491.2 + 35960 0.68 0.364382
Target:  5'- aGCCCCgGcgugGCCCagGCCCuCCgccgCGCUCc -3'
miRNA:   3'- gCGGGGgUa---UGGGg-CGGG-GGa---GCGAG- -5'
2624 3' -65.3 NC_001491.2 + 29453 0.69 0.349499
Target:  5'- aCGCCCCCAccCCCCGUCUCgggagCGCg- -3'
miRNA:   3'- -GCGGGGGUauGGGGCGGGGga---GCGag -5'
2624 3' -65.3 NC_001491.2 + 122095 0.69 0.342221
Target:  5'- uGCCCCCAaaccauCCCCGagcuuUCCUCUCGCcuUCa -3'
miRNA:   3'- gCGGGGGUau----GGGGC-----GGGGGAGCG--AG- -5'
2624 3' -65.3 NC_001491.2 + 27581 0.69 0.327996
Target:  5'- aCGCuuuCCCCcgACCUCGCCCCgagUCGCg- -3'
miRNA:   3'- -GCG---GGGGuaUGGGGCGGGGg--AGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.