Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 48660 | 1.14 | 0.000952 |
Target: 5'- gGCACAACUUCCGGCGCACAUGGAUCCc -3' miRNA: 3'- -CGUGUUGAAGGCCGCGUGUACCUAGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 30619 | 0.81 | 0.161626 |
Target: 5'- -aGCAGCccaCCGGUGCACAUGGcgCCg -3' miRNA: 3'- cgUGUUGaa-GGCCGCGUGUACCuaGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 13219 | 0.75 | 0.357885 |
Target: 5'- aGCACAccccGCgccCCGGCGuCACGUGGAUg- -3' miRNA: 3'- -CGUGU----UGaa-GGCCGC-GUGUACCUAgg -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 22271 | 0.74 | 0.410064 |
Target: 5'- gGCGCAGCggaucgucgaggcggCCGGgGCgACGUGGGUCg -3' miRNA: 3'- -CGUGUUGaa-------------GGCCgCG-UGUACCUAGg -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 41989 | 0.72 | 0.493878 |
Target: 5'- cGCACAAUcagCuCGG-GCGCGUGGAUaCCg -3' miRNA: 3'- -CGUGUUGaa-G-GCCgCGUGUACCUA-GG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 12473 | 0.72 | 0.515249 |
Target: 5'- gGCAgCAGCgcgUCCGuGCGCACGcgggcGGAUCg -3' miRNA: 3'- -CGU-GUUGa--AGGC-CGCGUGUa----CCUAGg -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 18796 | 0.71 | 0.556812 |
Target: 5'- uGCGCGACcgccgggguugCCGGgGCACuUGGGUUCc -3' miRNA: 3'- -CGUGUUGaa---------GGCCgCGUGuACCUAGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 544 | 0.71 | 0.559029 |
Target: 5'- aCACgAGCUcaUCCGGCGCGagguCGUacGGGUCCu -3' miRNA: 3'- cGUG-UUGA--AGGCCGCGU----GUA--CCUAGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 12765 | 0.71 | 0.58132 |
Target: 5'- cCGCGGCagacgUGGCGCGCGUGGA-CCa -3' miRNA: 3'- cGUGUUGaag--GCCGCGUGUACCUaGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 23608 | 0.71 | 0.597033 |
Target: 5'- gGCGCGACg-CCGGCggaccgggcacggcuGCGCAUGGuGUUCg -3' miRNA: 3'- -CGUGUUGaaGGCCG---------------CGUGUACC-UAGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 19459 | 0.7 | 0.626358 |
Target: 5'- aGCGCGAUcgcguucgCCGGCGUgauccGCGUGGAcacgCCg -3' miRNA: 3'- -CGUGUUGaa------GGCCGCG-----UGUACCUa---GG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 35319 | 0.7 | 0.634268 |
Target: 5'- cGCGCcgAGCUUCCgGGCgaucggcgcggccgGCGCGUGGAUg- -3' miRNA: 3'- -CGUG--UUGAAGG-CCG--------------CGUGUACCUAgg -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 22170 | 0.7 | 0.637657 |
Target: 5'- -aGCAGCg-CCGGCGCugGgaucGGGUUCg -3' miRNA: 3'- cgUGUUGaaGGCCGCGugUa---CCUAGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 17848 | 0.7 | 0.64895 |
Target: 5'- cGCGCAGCagcgcCCGGCGgGaauccUcgGGGUCCg -3' miRNA: 3'- -CGUGUUGaa---GGCCGCgU-----GuaCCUAGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 40162 | 0.7 | 0.64895 |
Target: 5'- aGUugAGCguguaCGGCGCGCAgcugcGGAUCg -3' miRNA: 3'- -CGugUUGaag--GCCGCGUGUa----CCUAGg -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 47472 | 0.69 | 0.681567 |
Target: 5'- cGCuCAACUUCCGGCcGUACGacgccgcUGGAa-- -3' miRNA: 3'- -CGuGUUGAAGGCCG-CGUGU-------ACCUagg -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 38100 | 0.69 | 0.682686 |
Target: 5'- cGCACGcagaaACUUCgGGUGCGaGUGGGcCCc -3' miRNA: 3'- -CGUGU-----UGAAGgCCGCGUgUACCUaGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 21556 | 0.69 | 0.693846 |
Target: 5'- cGCGCGugaugaucaccuGCcgguaaUCCGGCGCccggccGCcgGGGUCCg -3' miRNA: 3'- -CGUGU------------UGa-----AGGCCGCG------UGuaCCUAGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 22019 | 0.69 | 0.715964 |
Target: 5'- aGCuCGACgccggCCGGUGCcgcCGUGGcgCCg -3' miRNA: 3'- -CGuGUUGaa---GGCCGCGu--GUACCuaGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 9002 | 0.68 | 0.725809 |
Target: 5'- cGCuCAACUUgucggccUCGGUGCGCG-GGAUCa -3' miRNA: 3'- -CGuGUUGAA-------GGCCGCGUGUaCCUAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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