miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26253 3' -52.1 NC_005345.2 + 544 0.71 0.559029
Target:  5'- aCACgAGCUcaUCCGGCGCGagguCGUacGGGUCCu -3'
miRNA:   3'- cGUG-UUGA--AGGCCGCGU----GUA--CCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 1184 0.66 0.861503
Target:  5'- cGCACAcgggcgGCUcggcagUCCGGCccgcgggccacgccGCGCGguacGGGUCCc -3'
miRNA:   3'- -CGUGU------UGA------AGGCCG--------------CGUGUa---CCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 2787 0.67 0.799957
Target:  5'- gGUACGGCUUgUCGGCGCcgGCGUGcgcucGAUCg -3'
miRNA:   3'- -CGUGUUGAA-GGCCGCG--UGUAC-----CUAGg -5'
26253 3' -52.1 NC_005345.2 + 5075 0.66 0.846849
Target:  5'- aGCuGCAGCccaUCGGCGCuCGgcGGGUCCa -3'
miRNA:   3'- -CG-UGUUGaa-GGCCGCGuGUa-CCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 5207 0.67 0.80975
Target:  5'- gGCACGGCcggcCCGGCGCuACAcgccgucgGGGUgCCc -3'
miRNA:   3'- -CGUGUUGaa--GGCCGCG-UGUa-------CCUA-GG- -5'
26253 3' -52.1 NC_005345.2 + 6876 0.66 0.864014
Target:  5'- cGC-CGAUg-CCGcuGCGCAUGUGGAUCg -3'
miRNA:   3'- -CGuGUUGaaGGC--CGCGUGUACCUAGg -5'
26253 3' -52.1 NC_005345.2 + 7941 0.67 0.779828
Target:  5'- gGUAgAAgUcgagCCGGCGgGCggGGAUCCc -3'
miRNA:   3'- -CGUgUUgAa---GGCCGCgUGuaCCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 9002 0.68 0.725809
Target:  5'- cGCuCAACUUgucggccUCGGUGCGCG-GGAUCa -3'
miRNA:   3'- -CGuGUUGAA-------GGCCGCGUGUaCCUAGg -5'
26253 3' -52.1 NC_005345.2 + 11164 0.66 0.846849
Target:  5'- uGUACGGCggcaccCCGGCGCA----GGUCCg -3'
miRNA:   3'- -CGUGUUGaa----GGCCGCGUguacCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 12473 0.72 0.515249
Target:  5'- gGCAgCAGCgcgUCCGuGCGCACGcgggcGGAUCg -3'
miRNA:   3'- -CGU-GUUGa--AGGC-CGCGUGUa----CCUAGg -5'
26253 3' -52.1 NC_005345.2 + 12765 0.71 0.58132
Target:  5'- cCGCGGCagacgUGGCGCGCGUGGA-CCa -3'
miRNA:   3'- cGUGUUGaag--GCCGCGUGUACCUaGG- -5'
26253 3' -52.1 NC_005345.2 + 13219 0.75 0.357885
Target:  5'- aGCACAccccGCgccCCGGCGuCACGUGGAUg- -3'
miRNA:   3'- -CGUGU----UGaa-GGCCGC-GUGUACCUAgg -5'
26253 3' -52.1 NC_005345.2 + 17848 0.7 0.64895
Target:  5'- cGCGCAGCagcgcCCGGCGgGaauccUcgGGGUCCg -3'
miRNA:   3'- -CGUGUUGaa---GGCCGCgU-----GuaCCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 18796 0.71 0.556812
Target:  5'- uGCGCGACcgccgggguugCCGGgGCACuUGGGUUCc -3'
miRNA:   3'- -CGUGUUGaa---------GGCCgCGUGuACCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 19459 0.7 0.626358
Target:  5'- aGCGCGAUcgcguucgCCGGCGUgauccGCGUGGAcacgCCg -3'
miRNA:   3'- -CGUGUUGaa------GGCCGCG-----UGUACCUa---GG- -5'
26253 3' -52.1 NC_005345.2 + 21556 0.69 0.693846
Target:  5'- cGCGCGugaugaucaccuGCcgguaaUCCGGCGCccggccGCcgGGGUCCg -3'
miRNA:   3'- -CGUGU------------UGa-----AGGCCGCG------UGuaCCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 22019 0.69 0.715964
Target:  5'- aGCuCGACgccggCCGGUGCcgcCGUGGcgCCg -3'
miRNA:   3'- -CGuGUUGaa---GGCCGCGu--GUACCuaGG- -5'
26253 3' -52.1 NC_005345.2 + 22170 0.7 0.637657
Target:  5'- -aGCAGCg-CCGGCGCugGgaucGGGUUCg -3'
miRNA:   3'- cgUGUUGaaGGCCGCGugUa---CCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 22271 0.74 0.410064
Target:  5'- gGCGCAGCggaucgucgaggcggCCGGgGCgACGUGGGUCg -3'
miRNA:   3'- -CGUGUUGaa-------------GGCCgCG-UGUACCUAGg -5'
26253 3' -52.1 NC_005345.2 + 22302 0.66 0.846849
Target:  5'- gGCACGuugcccGCgcUCGGCGCGCcgGGugCCg -3'
miRNA:   3'- -CGUGU------UGaaGGCCGCGUGuaCCuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.