Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 48660 | 1.14 | 0.000952 |
Target: 5'- gGCACAACUUCCGGCGCACAUGGAUCCc -3' miRNA: 3'- -CGUGUUGAAGGCCGCGUGUACCUAGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 48040 | 0.66 | 0.836999 |
Target: 5'- aCGCGGCUgugcucgUCCGGCGCGCAccGcUCg -3' miRNA: 3'- cGUGUUGA-------AGGCCGCGUGUacCuAGg -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 47990 | 0.66 | 0.837906 |
Target: 5'- cGCGCAcGCUccccUCgCGGCGCG-GUGGuGUCCc -3' miRNA: 3'- -CGUGU-UGA----AG-GCCGCGUgUACC-UAGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 47472 | 0.69 | 0.681567 |
Target: 5'- cGCuCAACUUCCGGCcGUACGacgccgcUGGAa-- -3' miRNA: 3'- -CGuGUUGAAGGCCG-CGUGU-------ACCUagg -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 45702 | 0.68 | 0.726899 |
Target: 5'- -gACAGgUcCCGGCGgGCggGGGUCUg -3' miRNA: 3'- cgUGUUgAaGGCCGCgUGuaCCUAGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 45528 | 0.66 | 0.855555 |
Target: 5'- gGCACAcCUg-CGGCGCGggcCGUGGggUCa -3' miRNA: 3'- -CGUGUuGAagGCCGCGU---GUACCuaGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 43514 | 0.67 | 0.799957 |
Target: 5'- uCGCGGCgaacCCGGCGCucGCGgagcGGAUCg -3' miRNA: 3'- cGUGUUGaa--GGCCGCG--UGUa---CCUAGg -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 42973 | 0.67 | 0.80975 |
Target: 5'- cGCACGAa--CCGGgcCGgGCGUGuGGUCCu -3' miRNA: 3'- -CGUGUUgaaGGCC--GCgUGUAC-CUAGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 42786 | 0.66 | 0.846849 |
Target: 5'- gGC-CGACUguagCCGGUGCGgAUGcGG-CCa -3' miRNA: 3'- -CGuGUUGAa---GGCCGCGUgUAC-CUaGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 42284 | 0.68 | 0.726899 |
Target: 5'- cCACcuCgaCCGGCGCGuCGUGGGcgUCCc -3' miRNA: 3'- cGUGuuGaaGGCCGCGU-GUACCU--AGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 41989 | 0.72 | 0.493878 |
Target: 5'- cGCACAAUcagCuCGG-GCGCGUGGAUaCCg -3' miRNA: 3'- -CGUGUUGaa-G-GCCgCGUGUACCUA-GG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 40262 | 0.67 | 0.789979 |
Target: 5'- aCGgGGCg-CCGGCGgGCAUGaGUCCg -3' miRNA: 3'- cGUgUUGaaGGCCGCgUGUACcUAGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 40162 | 0.7 | 0.64895 |
Target: 5'- aGUugAGCguguaCGGCGCGCAgcugcGGAUCg -3' miRNA: 3'- -CGugUUGaag--GCCGCGUGUa----CCUAGg -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 39381 | 0.68 | 0.769516 |
Target: 5'- uGCGCGAUgccgCCGGUGUccuGCAggGGAaCCg -3' miRNA: 3'- -CGUGUUGaa--GGCCGCG---UGUa-CCUaGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 38564 | 0.66 | 0.855555 |
Target: 5'- cGCGCccaccGGCa--CGGCGUACGUGGcgCUc -3' miRNA: 3'- -CGUG-----UUGaagGCCGCGUGUACCuaGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 38100 | 0.69 | 0.682686 |
Target: 5'- cGCACGcagaaACUUCgGGUGCGaGUGGGcCCc -3' miRNA: 3'- -CGUGU-----UGAAGgCCGCGUgUACCUaGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 37948 | 0.67 | 0.799957 |
Target: 5'- cGC-CGACggugcCCGaGCGgAUcgGGAUCCg -3' miRNA: 3'- -CGuGUUGaa---GGC-CGCgUGuaCCUAGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 37032 | 0.66 | 0.855555 |
Target: 5'- -aGCGGCacCgGGCGaGCcgGGAUCCg -3' miRNA: 3'- cgUGUUGaaGgCCGCgUGuaCCUAGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 36160 | 0.68 | 0.769516 |
Target: 5'- aCAuCGGCgggUCCGGCGUGCAgcguUGGucgCCg -3' miRNA: 3'- cGU-GUUGa--AGGCCGCGUGU----ACCua-GG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 35319 | 0.7 | 0.634268 |
Target: 5'- cGCGCcgAGCUUCCgGGCgaucggcgcggccgGCGCGUGGAUg- -3' miRNA: 3'- -CGUG--UUGAAGG-CCG--------------CGUGUACCUAgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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