Results 21 - 40 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 7941 | 0.67 | 0.779828 |
Target: 5'- gGUAgAAgUcgagCCGGCGgGCggGGAUCCc -3' miRNA: 3'- -CGUgUUgAa---GGCCGCgUGuaCCUAGG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 31214 | 0.67 | 0.778805 |
Target: 5'- uGCGCAcccggguGCggCCgGGUGUACGgcGGGUCCg -3' miRNA: 3'- -CGUGU-------UGaaGG-CCGCGUGUa-CCUAGG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 39381 | 0.68 | 0.769516 |
Target: 5'- uGCGCGAUgccgCCGGUGUccuGCAggGGAaCCg -3' miRNA: 3'- -CGUGUUGaa--GGCCGCG---UGUa-CCUaGG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 36160 | 0.68 | 0.769516 |
Target: 5'- aCAuCGGCgggUCCGGCGUGCAgcguUGGucgCCg -3' miRNA: 3'- cGU-GUUGa--AGGCCGCGUGU----ACCua-GG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 42284 | 0.68 | 0.726899 |
Target: 5'- cCACcuCgaCCGGCGCGuCGUGGGcgUCCc -3' miRNA: 3'- cGUGuuGaaGGCCGCGU-GUACCU--AGG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 45702 | 0.68 | 0.726899 |
Target: 5'- -gACAGgUcCCGGCGgGCggGGGUCUg -3' miRNA: 3'- cgUGUUgAaGGCCGCgUGuaCCUAGG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 9002 | 0.68 | 0.725809 |
Target: 5'- cGCuCAACUUgucggccUCGGUGCGCG-GGAUCa -3' miRNA: 3'- -CGuGUUGAA-------GGCCGCGUGUaCCUAGg -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 22019 | 0.69 | 0.715964 |
Target: 5'- aGCuCGACgccggCCGGUGCcgcCGUGGcgCCg -3' miRNA: 3'- -CGuGUUGaa---GGCCGCGu--GUACCuaGG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 21556 | 0.69 | 0.693846 |
Target: 5'- cGCGCGugaugaucaccuGCcgguaaUCCGGCGCccggccGCcgGGGUCCg -3' miRNA: 3'- -CGUGU------------UGa-----AGGCCGCG------UGuaCCUAGG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 38100 | 0.69 | 0.682686 |
Target: 5'- cGCACGcagaaACUUCgGGUGCGaGUGGGcCCc -3' miRNA: 3'- -CGUGU-----UGAAGgCCGCGUgUACCUaGG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 47472 | 0.69 | 0.681567 |
Target: 5'- cGCuCAACUUCCGGCcGUACGacgccgcUGGAa-- -3' miRNA: 3'- -CGuGUUGAAGGCCG-CGUGU-------ACCUagg -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 40162 | 0.7 | 0.64895 |
Target: 5'- aGUugAGCguguaCGGCGCGCAgcugcGGAUCg -3' miRNA: 3'- -CGugUUGaag--GCCGCGUGUa----CCUAGg -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 17848 | 0.7 | 0.64895 |
Target: 5'- cGCGCAGCagcgcCCGGCGgGaauccUcgGGGUCCg -3' miRNA: 3'- -CGUGUUGaa---GGCCGCgU-----GuaCCUAGG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 22170 | 0.7 | 0.637657 |
Target: 5'- -aGCAGCg-CCGGCGCugGgaucGGGUUCg -3' miRNA: 3'- cgUGUUGaaGGCCGCGugUa---CCUAGG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 35319 | 0.7 | 0.634268 |
Target: 5'- cGCGCcgAGCUUCCgGGCgaucggcgcggccgGCGCGUGGAUg- -3' miRNA: 3'- -CGUG--UUGAAGG-CCG--------------CGUGUACCUAgg -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 19459 | 0.7 | 0.626358 |
Target: 5'- aGCGCGAUcgcguucgCCGGCGUgauccGCGUGGAcacgCCg -3' miRNA: 3'- -CGUGUUGaa------GGCCGCG-----UGUACCUa---GG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 23608 | 0.71 | 0.597033 |
Target: 5'- gGCGCGACg-CCGGCggaccgggcacggcuGCGCAUGGuGUUCg -3' miRNA: 3'- -CGUGUUGaaGGCCG---------------CGUGUACC-UAGG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 12765 | 0.71 | 0.58132 |
Target: 5'- cCGCGGCagacgUGGCGCGCGUGGA-CCa -3' miRNA: 3'- cGUGUUGaag--GCCGCGUGUACCUaGG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 544 | 0.71 | 0.559029 |
Target: 5'- aCACgAGCUcaUCCGGCGCGagguCGUacGGGUCCu -3' miRNA: 3'- cGUG-UUGA--AGGCCGCGU----GUA--CCUAGG- -5' |
|||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 18796 | 0.71 | 0.556812 |
Target: 5'- uGCGCGACcgccgggguugCCGGgGCACuUGGGUUCc -3' miRNA: 3'- -CGUGUUGaa---------GGCCgCGUGuACCUAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home