Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26253 | 3' | -52.1 | NC_005345.2 | + | 12473 | 0.72 | 0.515249 |
Target: 5'- gGCAgCAGCgcgUCCGuGCGCACGcgggcGGAUCg -3' miRNA: 3'- -CGU-GUUGa--AGGC-CGCGUGUa----CCUAGg -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 41989 | 0.72 | 0.493878 |
Target: 5'- cGCACAAUcagCuCGG-GCGCGUGGAUaCCg -3' miRNA: 3'- -CGUGUUGaa-G-GCCgCGUGUACCUA-GG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 22271 | 0.74 | 0.410064 |
Target: 5'- gGCGCAGCggaucgucgaggcggCCGGgGCgACGUGGGUCg -3' miRNA: 3'- -CGUGUUGaa-------------GGCCgCG-UGUACCUAGg -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 13219 | 0.75 | 0.357885 |
Target: 5'- aGCACAccccGCgccCCGGCGuCACGUGGAUg- -3' miRNA: 3'- -CGUGU----UGaa-GGCCGC-GUGUACCUAgg -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 30619 | 0.81 | 0.161626 |
Target: 5'- -aGCAGCccaCCGGUGCACAUGGcgCCg -3' miRNA: 3'- cgUGUUGaa-GGCCGCGUGUACCuaGG- -5' |
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26253 | 3' | -52.1 | NC_005345.2 | + | 48660 | 1.14 | 0.000952 |
Target: 5'- gGCACAACUUCCGGCGCACAUGGAUCCc -3' miRNA: 3'- -CGUGUUGAAGGCCGCGUGUACCUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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