miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26253 5' -64.3 NC_005345.2 + 48694 1.05 0.000193
Target:  5'- cAAGGCUGCAGGCCUCGCCCGCGAGGUg -3'
miRNA:   3'- -UUCCGACGUCCGGAGCGGGCGCUCCA- -5'
26253 5' -64.3 NC_005345.2 + 34085 0.82 0.014083
Target:  5'- cAGGcGCUGCAGGCCggCGCCCGCGAcGGc -3'
miRNA:   3'- -UUC-CGACGUCCGGa-GCGGGCGCU-CCa -5'
26253 5' -64.3 NC_005345.2 + 47121 0.76 0.039529
Target:  5'- -uGGCUGCAGGCCg-GCCCcggagcagcggaGCGAGGg -3'
miRNA:   3'- uuCCGACGUCCGGagCGGG------------CGCUCCa -5'
26253 5' -64.3 NC_005345.2 + 15842 0.72 0.082214
Target:  5'- uGGGC-GCGGGCC-CGCUCGCGGuGGg -3'
miRNA:   3'- uUCCGaCGUCCGGaGCGGGCGCU-CCa -5'
26253 5' -64.3 NC_005345.2 + 9689 0.7 0.111364
Target:  5'- -cGGCUGCAGGCCgaucagcgggcCGCCgCGUGAGc- -3'
miRNA:   3'- uuCCGACGUCCGGa----------GCGG-GCGCUCca -5'
26253 5' -64.3 NC_005345.2 + 41097 0.7 0.114449
Target:  5'- cAGGCUguuuacGCGGGCCgcagcaCGCCCGCGguacGGGg -3'
miRNA:   3'- uUCCGA------CGUCCGGa-----GCGGGCGC----UCCa -5'
26253 5' -64.3 NC_005345.2 + 44888 0.7 0.117614
Target:  5'- cGAGGCgcaGCAacguGGCCUCGCCCGCu---- -3'
miRNA:   3'- -UUCCGa--CGU----CCGGAGCGGGCGcucca -5'
26253 5' -64.3 NC_005345.2 + 28949 0.7 0.124189
Target:  5'- --aGCUGaCGGGCCUUaUCCGCGAGGc -3'
miRNA:   3'- uucCGAC-GUCCGGAGcGGGCGCUCCa -5'
26253 5' -64.3 NC_005345.2 + 37585 0.69 0.146011
Target:  5'- cGGGCUGCAGGCgggcgaccggCUCGCgUUGCGAGu- -3'
miRNA:   3'- uUCCGACGUCCG----------GAGCG-GGCGCUCca -5'
26253 5' -64.3 NC_005345.2 + 18631 0.68 0.15403
Target:  5'- cAGaGCgGCAGcacCCUCGCCCGCG-GGUc -3'
miRNA:   3'- uUC-CGaCGUCc--GGAGCGGGCGCuCCA- -5'
26253 5' -64.3 NC_005345.2 + 26898 0.68 0.162448
Target:  5'- gAGGcGCUGCAGGCggCGCUCGcCGAccGGUa -3'
miRNA:   3'- -UUC-CGACGUCCGgaGCGGGC-GCU--CCA- -5'
26253 5' -64.3 NC_005345.2 + 17498 0.68 0.16681
Target:  5'- gAAGGaaCUGCGGGCCgccggUCGCCggccggGCGAGGa -3'
miRNA:   3'- -UUCC--GACGUCCGG-----AGCGGg-----CGCUCCa -5'
26253 5' -64.3 NC_005345.2 + 47112 0.68 0.171276
Target:  5'- cGGGCcGCgccGGGCC-CGCUCGaCGAGGa -3'
miRNA:   3'- uUCCGaCG---UCCGGaGCGGGC-GCUCCa -5'
26253 5' -64.3 NC_005345.2 + 26616 0.67 0.205627
Target:  5'- -cGGC-GCAGGCCggugUGCCCGaggacuacacCGAGGc -3'
miRNA:   3'- uuCCGaCGUCCGGa---GCGGGC----------GCUCCa -5'
26253 5' -64.3 NC_005345.2 + 1207 0.67 0.205627
Target:  5'- -cGGCccGCGGGCCaCGCCgCGCGguacGGGUc -3'
miRNA:   3'- uuCCGa-CGUCCGGaGCGG-GCGC----UCCA- -5'
26253 5' -64.3 NC_005345.2 + 28865 0.67 0.210995
Target:  5'- gGGGGCUcuucgGCGGGCacuacgggCGCCacugCGCGAGGUc -3'
miRNA:   3'- -UUCCGA-----CGUCCGga------GCGG----GCGCUCCA- -5'
26253 5' -64.3 NC_005345.2 + 4263 0.67 0.210995
Target:  5'- cGAGGCcacguUGCuGcGCCUCGCgacgcggccgCCGCGGGGc -3'
miRNA:   3'- -UUCCG-----ACGuC-CGGAGCG----------GGCGCUCCa -5'
26253 5' -64.3 NC_005345.2 + 25909 0.66 0.216483
Target:  5'- -cGGcCUGCgAGGCCUCGCgCGCGu--- -3'
miRNA:   3'- uuCC-GACG-UCCGGAGCGgGCGCucca -5'
26253 5' -64.3 NC_005345.2 + 23966 0.66 0.216483
Target:  5'- cGGGCUGCu-GUCgCGgCCGCGAGGc -3'
miRNA:   3'- uUCCGACGucCGGaGCgGGCGCUCCa -5'
26253 5' -64.3 NC_005345.2 + 19133 0.66 0.222094
Target:  5'- -uGGCUGCGGGCCgcauggCGCgccacccggaccCCGgcCGAGGa -3'
miRNA:   3'- uuCCGACGUCCGGa-----GCG------------GGC--GCUCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.