Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26253 | 5' | -64.3 | NC_005345.2 | + | 28865 | 0.67 | 0.210995 |
|
Target: 5'- gGGGGCUcuucgGCGGGCacuacgggCGCCacugCGCGAGGUc -3' miRNA: 3'- -UUCCGA-----CGUCCGga------GCGG----GCGCUCCA- -5' |
|||||||
| 26253 | 5' | -64.3 | NC_005345.2 | + | 1207 | 0.67 | 0.205627 |
|
Target: 5'- -cGGCccGCGGGCCaCGCCgCGCGguacGGGUc -3' miRNA: 3'- uuCCGa-CGUCCGGaGCGG-GCGC----UCCA- -5' |
|||||||
| 26253 | 5' | -64.3 | NC_005345.2 | + | 47112 | 0.68 | 0.171276 |
|
Target: 5'- cGGGCcGCgccGGGCC-CGCUCGaCGAGGa -3' miRNA: 3'- uUCCGaCG---UCCGGaGCGGGC-GCUCCa -5' |
|||||||
| 26253 | 5' | -64.3 | NC_005345.2 | + | 17498 | 0.68 | 0.16681 |
|
Target: 5'- gAAGGaaCUGCGGGCCgccggUCGCCggccggGCGAGGa -3' miRNA: 3'- -UUCC--GACGUCCGG-----AGCGGg-----CGCUCCa -5' |
|||||||
| 26253 | 5' | -64.3 | NC_005345.2 | + | 44888 | 0.7 | 0.117614 |
|
Target: 5'- cGAGGCgcaGCAacguGGCCUCGCCCGCu---- -3' miRNA: 3'- -UUCCGa--CGU----CCGGAGCGGGCGcucca -5' |
|||||||
| 26253 | 5' | -64.3 | NC_005345.2 | + | 15842 | 0.72 | 0.082214 |
|
Target: 5'- uGGGC-GCGGGCC-CGCUCGCGGuGGg -3' miRNA: 3'- uUCCGaCGUCCGGaGCGGGCGCU-CCa -5' |
|||||||
| 26253 | 5' | -64.3 | NC_005345.2 | + | 48694 | 1.05 | 0.000193 |
|
Target: 5'- cAAGGCUGCAGGCCUCGCCCGCGAGGUg -3' miRNA: 3'- -UUCCGACGUCCGGAGCGGGCGCUCCA- -5' |
|||||||
| 26253 | 5' | -64.3 | NC_005345.2 | + | 3027 | 0.66 | 0.23967 |
|
Target: 5'- cGGGCggcgGCAGcaugCUCGCuuGCGGGGg -3' miRNA: 3'- uUCCGa---CGUCcg--GAGCGggCGCUCCa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home