miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26254 5' -62.4 NC_005345.2 + 48490 1.04 0.000405
Target:  5'- cAACGCCGGGUUCCGCACGGUCCCGCUc -3'
miRNA:   3'- -UUGCGGCCCAAGGCGUGCCAGGGCGA- -5'
26254 5' -62.4 NC_005345.2 + 6359 0.75 0.06887
Target:  5'- cGGCGCCGGGUuggCCGCgguggcguuGCGGUCCCa-- -3'
miRNA:   3'- -UUGCGGCCCAa--GGCG---------UGCCAGGGcga -5'
26254 5' -62.4 NC_005345.2 + 22018 0.75 0.074866
Target:  5'- cAUGCCGGGcccgCCGgACGGUCCCGg- -3'
miRNA:   3'- uUGCGGCCCaa--GGCgUGCCAGGGCga -5'
26254 5' -62.4 NC_005345.2 + 9197 0.74 0.096
Target:  5'- cGACGCCGGGgugCCGUACGcguacguaGUCCCGg- -3'
miRNA:   3'- -UUGCGGCCCaa-GGCGUGC--------CAGGGCga -5'
26254 5' -62.4 NC_005345.2 + 43870 0.73 0.107109
Target:  5'- --gGCCGGGacUCCGCggcggaGCGcGUCCCGCUg -3'
miRNA:   3'- uugCGGCCCa-AGGCG------UGC-CAGGGCGA- -5'
26254 5' -62.4 NC_005345.2 + 35938 0.73 0.113106
Target:  5'- gGGCGCgGGGUgugcucgCCGCGCGGgcugCCGCUc -3'
miRNA:   3'- -UUGCGgCCCAa------GGCGUGCCag--GGCGA- -5'
26254 5' -62.4 NC_005345.2 + 47108 0.72 0.122692
Target:  5'- -cCGCCGGG--CCGCGcCGGgCCCGCUc -3'
miRNA:   3'- uuGCGGCCCaaGGCGU-GCCaGGGCGA- -5'
26254 5' -62.4 NC_005345.2 + 46086 0.72 0.129497
Target:  5'- -cCGCCGGGgcCUGCGCGGacaUCCaCGCg -3'
miRNA:   3'- uuGCGGCCCaaGGCGUGCC---AGG-GCGa -5'
26254 5' -62.4 NC_005345.2 + 24828 0.71 0.136649
Target:  5'- -gUGCuCGGGUUCgacggcucgCGCaaGCGGUCCCGCg -3'
miRNA:   3'- uuGCG-GCCCAAG---------GCG--UGCCAGGGCGa -5'
26254 5' -62.4 NC_005345.2 + 31590 0.71 0.15614
Target:  5'- -cUGCCGGGcccugcUCgGCGCGG-CCCGCg -3'
miRNA:   3'- uuGCGGCCCa-----AGgCGUGCCaGGGCGa -5'
26254 5' -62.4 NC_005345.2 + 19163 0.7 0.160329
Target:  5'- -uCGCCGGGc-CCGUACGGcugCCCGUc -3'
miRNA:   3'- uuGCGGCCCaaGGCGUGCCa--GGGCGa -5'
26254 5' -62.4 NC_005345.2 + 34794 0.7 0.16462
Target:  5'- uGCGCCGGGU----CGCGGUCCuCGCg -3'
miRNA:   3'- uUGCGGCCCAaggcGUGCCAGG-GCGa -5'
26254 5' -62.4 NC_005345.2 + 41679 0.7 0.187649
Target:  5'- cGGCGCCGaGGUcgaucgcugCCGCGgucacgaucCGGUCCUGCUc -3'
miRNA:   3'- -UUGCGGC-CCAa--------GGCGU---------GCCAGGGCGA- -5'
26254 5' -62.4 NC_005345.2 + 37787 0.69 0.192582
Target:  5'- cGCGaCCGGGgcugcugCCGUugGCGGUgCCGCUc -3'
miRNA:   3'- uUGC-GGCCCaa-----GGCG--UGCCAgGGCGA- -5'
26254 5' -62.4 NC_005345.2 + 24632 0.69 0.19712
Target:  5'- -uCGCCGGGcgCCuCGCGGuggucgaccaggaUCCCGCg -3'
miRNA:   3'- uuGCGGCCCaaGGcGUGCC-------------AGGGCGa -5'
26254 5' -62.4 NC_005345.2 + 42533 0.69 0.197629
Target:  5'- -cCGCCGGGcgcaaccgCCGC-CGGUCCacaGCUc -3'
miRNA:   3'- uuGCGGCCCaa------GGCGuGCCAGGg--CGA- -5'
26254 5' -62.4 NC_005345.2 + 35001 0.68 0.254681
Target:  5'- cGGCGCCGGGgcgCUGCGgCGG-CCaCGUg -3'
miRNA:   3'- -UUGCGGCCCaa-GGCGU-GCCaGG-GCGa -5'
26254 5' -62.4 NC_005345.2 + 11817 0.68 0.254681
Target:  5'- -cCGagaCGGGUcaucgccgUCUGCA-GGUCCCGCUg -3'
miRNA:   3'- uuGCg--GCCCA--------AGGCGUgCCAGGGCGA- -5'
26254 5' -62.4 NC_005345.2 + 31306 0.68 0.254681
Target:  5'- -cCGCCGGGcgcugCUGCGCGGUCUgGa- -3'
miRNA:   3'- uuGCGGCCCaa---GGCGUGCCAGGgCga -5'
26254 5' -62.4 NC_005345.2 + 28735 0.67 0.261076
Target:  5'- -uCGUCGGGUUCCuGUAcuCGGcCCUGCa -3'
miRNA:   3'- uuGCGGCCCAAGG-CGU--GCCaGGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.