miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26254 5' -62.4 NC_005345.2 + 3770 0.66 0.348149
Target:  5'- gGACgGCCGaGGUgaacgcggacccgcgCCGCACGGUCCacaccggUGCg -3'
miRNA:   3'- -UUG-CGGC-CCAa--------------GGCGUGCCAGG-------GCGa -5'
26254 5' -62.4 NC_005345.2 + 5611 0.66 0.302205
Target:  5'- gGGCGCCGGGcucguggCCGaCGCGGUgaUCGCc -3'
miRNA:   3'- -UUGCGGCCCaa-----GGC-GUGCCAg-GGCGa -5'
26254 5' -62.4 NC_005345.2 + 6180 0.66 0.340156
Target:  5'- cGGC-CCGGcgcaGUUCCGCGCG-UUCCGCg -3'
miRNA:   3'- -UUGcGGCC----CAAGGCGUGCcAGGGCGa -5'
26254 5' -62.4 NC_005345.2 + 6311 0.67 0.281044
Target:  5'- --gGCCGGGUUCCggccgaaguacuGCACGagcGUCUCGUa -3'
miRNA:   3'- uugCGGCCCAAGG------------CGUGC---CAGGGCGa -5'
26254 5' -62.4 NC_005345.2 + 6359 0.75 0.06887
Target:  5'- cGGCGCCGGGUuggCCGCgguggcguuGCGGUCCCa-- -3'
miRNA:   3'- -UUGCGGCCCAa--GGCG---------UGCCAGGGcga -5'
26254 5' -62.4 NC_005345.2 + 6406 0.66 0.309526
Target:  5'- -cCGCCGGGUgccgguccgaUCCGagACGuUCCUGCUg -3'
miRNA:   3'- uuGCGGCCCA----------AGGCg-UGCcAGGGCGA- -5'
26254 5' -62.4 NC_005345.2 + 7020 0.66 0.324573
Target:  5'- cGACGCCGGGUcgCCGguCGaccggCCgGCg -3'
miRNA:   3'- -UUGCGGCCCAa-GGCguGCca---GGgCGa -5'
26254 5' -62.4 NC_005345.2 + 9197 0.74 0.096
Target:  5'- cGACGCCGGGgugCCGUACGcguacguaGUCCCGg- -3'
miRNA:   3'- -UUGCGGCCCaa-GGCGUGC--------CAGGGCga -5'
26254 5' -62.4 NC_005345.2 + 11201 0.66 0.333077
Target:  5'- cGACGCCGGccugUgGCACGGgcaugggcaugacugCCCGCg -3'
miRNA:   3'- -UUGCGGCCcaa-GgCGUGCCa--------------GGGCGa -5'
26254 5' -62.4 NC_005345.2 + 11817 0.68 0.254681
Target:  5'- -cCGagaCGGGUcaucgccgUCUGCA-GGUCCCGCUg -3'
miRNA:   3'- uuGCg--GCCCA--------AGGCGUgCCAGGGCGA- -5'
26254 5' -62.4 NC_005345.2 + 19163 0.7 0.160329
Target:  5'- -uCGCCGGGc-CCGUACGGcugCCCGUc -3'
miRNA:   3'- uuGCGGCCCaaGGCGUGCCa--GGGCGa -5'
26254 5' -62.4 NC_005345.2 + 22018 0.75 0.074866
Target:  5'- cAUGCCGGGcccgCCGgACGGUCCCGg- -3'
miRNA:   3'- uUGCGGCCCaa--GGCgUGCCAGGGCga -5'
26254 5' -62.4 NC_005345.2 + 24632 0.69 0.19712
Target:  5'- -uCGCCGGGcgCCuCGCGGuggucgaccaggaUCCCGCg -3'
miRNA:   3'- uuGCGGCCCaaGGcGUGCC-------------AGGGCGa -5'
26254 5' -62.4 NC_005345.2 + 24828 0.71 0.136649
Target:  5'- -gUGCuCGGGUUCgacggcucgCGCaaGCGGUCCCGCg -3'
miRNA:   3'- uuGCG-GCCCAAG---------GCG--UGCCAGGGCGa -5'
26254 5' -62.4 NC_005345.2 + 28735 0.67 0.261076
Target:  5'- -uCGUCGGGUUCCuGUAcuCGGcCCUGCa -3'
miRNA:   3'- uuGCGGCCCAAGG-CGU--GCCaGGGCGa -5'
26254 5' -62.4 NC_005345.2 + 31306 0.68 0.254681
Target:  5'- -cCGCCGGGcgcugCUGCGCGGUCUgGa- -3'
miRNA:   3'- uuGCGGCCCaa---GGCGUGCCAGGgCga -5'
26254 5' -62.4 NC_005345.2 + 31590 0.71 0.15614
Target:  5'- -cUGCCGGGcccugcUCgGCGCGG-CCCGCg -3'
miRNA:   3'- uuGCGGCCCa-----AGgCGUGCCaGGGCGa -5'
26254 5' -62.4 NC_005345.2 + 32258 0.66 0.340156
Target:  5'- cGCGCaCGgucaaGGUUCCGaagGCGGaCCCGCg -3'
miRNA:   3'- uUGCG-GC-----CCAAGGCg--UGCCaGGGCGa -5'
26254 5' -62.4 NC_005345.2 + 33020 0.67 0.295017
Target:  5'- cGACGaUCGGGcucggCCGCgggguGCGGUCCgGCUc -3'
miRNA:   3'- -UUGC-GGCCCaa---GGCG-----UGCCAGGgCGA- -5'
26254 5' -62.4 NC_005345.2 + 33023 0.66 0.302205
Target:  5'- -cCGCCGGGacgCCGC-CGGcCggCCGCUg -3'
miRNA:   3'- uuGCGGCCCaa-GGCGuGCCaG--GGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.