Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26255 | 3' | -60 | NC_005345.2 | + | 17156 | 0.66 | 0.450354 |
Target: 5'- cGGGGCGGUCGUGCcgacgggggcgGCGuagaagucggcgccuUCCcacaGCCUCGg -3' miRNA: 3'- -CCCCGUCGGCAUG-----------UGU---------------AGGa---CGGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 17578 | 0.66 | 0.456136 |
Target: 5'- -cGGCagagcugcaucaGGUCGUGCGCGUCCU-CCUCGc -3' miRNA: 3'- ccCCG------------UCGGCAUGUGUAGGAcGGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 12651 | 0.66 | 0.46586 |
Target: 5'- cGGGGCGcggucggccGCCGUugGCGUaCCcGCCgggUCGg -3' miRNA: 3'- -CCCCGU---------CGGCAugUGUA-GGaCGG---GGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 13378 | 0.67 | 0.37396 |
Target: 5'- --aGCAGCgCGggaauCGaGUCCUGCCCCGg -3' miRNA: 3'- cccCGUCG-GCau---GUgUAGGACGGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 22068 | 0.67 | 0.365468 |
Target: 5'- -cGGCAGaCagGUACGCGUCggugauCUGCCCCa -3' miRNA: 3'- ccCCGUC-Gg-CAUGUGUAG------GACGGGGc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 39042 | 0.74 | 0.128415 |
Target: 5'- uGGGGCAGUCGUcGCGCAUgugCCgcucgGCCCgGa -3' miRNA: 3'- -CCCCGUCGGCA-UGUGUA---GGa----CGGGgC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 44590 | 0.74 | 0.140825 |
Target: 5'- cGGGcaGCAGUCGUACACgcugccgucguccggGUCgUGCCCCu -3' miRNA: 3'- -CCC--CGUCGGCAUGUG---------------UAGgACGGGGc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 43363 | 0.72 | 0.175378 |
Target: 5'- cGGGGuCGGCCGgguacgGCACGccgagcaccugcgCCUGCgCCCGg -3' miRNA: 3'- -CCCC-GUCGGCa-----UGUGUa------------GGACG-GGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 37992 | 0.72 | 0.186837 |
Target: 5'- cGGGGUgccGCCGUACAUcuugaccaCCgGCCCCGg -3' miRNA: 3'- -CCCCGu--CGGCAUGUGua------GGaCGGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 41262 | 0.72 | 0.196885 |
Target: 5'- --aGCAGCCGUGCGCcgCCUcggcGUCCCa -3' miRNA: 3'- cccCGUCGGCAUGUGuaGGA----CGGGGc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 445 | 0.71 | 0.21284 |
Target: 5'- cGGGCGGguCCGUgGCGCAUaCCcGCCCCu -3' miRNA: 3'- cCCCGUC--GGCA-UGUGUA-GGaCGGGGc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 37284 | 0.7 | 0.248087 |
Target: 5'- aGGGGCAcGUCGUGCAgGgCCgaUGCCCaCGc -3' miRNA: 3'- -CCCCGU-CGGCAUGUgUaGG--ACGGG-GC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 7253 | 0.7 | 0.260866 |
Target: 5'- cGGGGCGGCCGaACcgacaaGCGUCgCcGCCCgCGc -3' miRNA: 3'- -CCCCGUCGGCaUG------UGUAG-GaCGGG-GC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 37793 | 0.69 | 0.28732 |
Target: 5'- cGGGGCugcuGCCGUugGCGgugccgcUCaCUGCUCgCGg -3' miRNA: 3'- -CCCCGu---CGGCAugUGU-------AG-GACGGG-GC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 39211 | 0.68 | 0.31736 |
Target: 5'- cGGGUuggcgaccgucgGGCCG-ACGCcgaCUGCCCCGg -3' miRNA: 3'- cCCCG------------UCGGCaUGUGuagGACGGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 34799 | 0.68 | 0.339999 |
Target: 5'- cGGGucgcgguccucgcGCAcGCCGUGCg---CCUGCCCCu -3' miRNA: 3'- -CCC-------------CGU-CGGCAUGuguaGGACGGGGc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 40871 | 0.68 | 0.3408 |
Target: 5'- aGGGCGGCCGcuucgaccggGCACAUgCUGCggacguugaUCCGg -3' miRNA: 3'- cCCCGUCGGCa---------UGUGUAgGACG---------GGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 25092 | 0.66 | 0.46586 |
Target: 5'- -cGGCucGCCGUACGCGUCCca-UCCGu -3' miRNA: 3'- ccCCGu-CGGCAUGUGUAGGacgGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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