miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26255 3' -60 NC_005345.2 + 10859 0.67 0.400227
Target:  5'- uGGGCGgacuGCCGcacgcgGCGCGUCCcgUGCCCg- -3'
miRNA:   3'- cCCCGU----CGGCa-----UGUGUAGG--ACGGGgc -5'
26255 3' -60 NC_005345.2 + 48699 0.66 0.464882
Target:  5'- aGGGGCGgguaugcGCCacggacccgcccGUACuACGUCC-GCCCCc -3'
miRNA:   3'- -CCCCGU-------CGG------------CAUG-UGUAGGaCGGGGc -5'
26255 3' -60 NC_005345.2 + 44665 0.66 0.437023
Target:  5'- uGGGCAcggcucgucgaGCCGgACACGgccgCCggGCCCCc -3'
miRNA:   3'- cCCCGU-----------CGGCaUGUGUa---GGa-CGGGGc -5'
26255 3' -60 NC_005345.2 + 3050 0.67 0.391341
Target:  5'- aGGGUcGCCGcgUGgAUGUCCgcgcagGCCCCGg -3'
miRNA:   3'- cCCCGuCGGC--AUgUGUAGGa-----CGGGGC- -5'
26255 3' -60 NC_005345.2 + 49144 0.66 0.465859
Target:  5'- cGGGgGGCCGUugACucCCUGaCCUGc -3'
miRNA:   3'- cCCCgUCGGCAugUGuaGGACgGGGC- -5'
26255 3' -60 NC_005345.2 + 34151 0.67 0.382585
Target:  5'- cGGGCAGUCG-ACGgAUCCgaGUCCuCGg -3'
miRNA:   3'- cCCCGUCGGCaUGUgUAGGa-CGGG-GC- -5'
26255 3' -60 NC_005345.2 + 10256 0.67 0.37396
Target:  5'- cGGGGCAGCguuCGUuCACG-CCgcgauCCCCGa -3'
miRNA:   3'- -CCCCGUCG---GCAuGUGUaGGac---GGGGC- -5'
26255 3' -60 NC_005345.2 + 29600 0.66 0.418379
Target:  5'- --aGCAGCUGaACACgGUCCUGUCCuCGa -3'
miRNA:   3'- cccCGUCGGCaUGUG-UAGGACGGG-GC- -5'
26255 3' -60 NC_005345.2 + 44590 0.74 0.140825
Target:  5'- cGGGcaGCAGUCGUACACgcugccgucguccggGUCgUGCCCCu -3'
miRNA:   3'- -CCC--CGUCGGCAUGUG---------------UAGgACGGGGc -5'
26255 3' -60 NC_005345.2 + 13378 0.67 0.37396
Target:  5'- --aGCAGCgCGggaauCGaGUCCUGCCCCGg -3'
miRNA:   3'- cccCGUCG-GCau---GUgUAGGACGGGGC- -5'
26255 3' -60 NC_005345.2 + 46033 0.67 0.37396
Target:  5'- cGGGGCGGCCccucggUAUGUCCgggGCCCg- -3'
miRNA:   3'- -CCCCGUCGGcau---GUGUAGGa--CGGGgc -5'
26255 3' -60 NC_005345.2 + 8396 0.67 0.37396
Target:  5'- -cGGCGGCCGaACG-GUCC-GCCCCa -3'
miRNA:   3'- ccCCGUCGGCaUGUgUAGGaCGGGGc -5'
26255 3' -60 NC_005345.2 + 6932 0.67 0.391341
Target:  5'- -cGGCGcGCgCGUACAUGUCCgcgGCCCa- -3'
miRNA:   3'- ccCCGU-CG-GCAUGUGUAGGa--CGGGgc -5'
26255 3' -60 NC_005345.2 + 1190 0.66 0.437023
Target:  5'- cGGGCGGCUcgGCA-GUCCgGCCCgCGg -3'
miRNA:   3'- cCCCGUCGGcaUGUgUAGGaCGGG-GC- -5'
26255 3' -60 NC_005345.2 + 445 0.71 0.21284
Target:  5'- cGGGCGGguCCGUgGCGCAUaCCcGCCCCu -3'
miRNA:   3'- cCCCGUC--GGCA-UGUGUA-GGaCGGGGc -5'
26255 3' -60 NC_005345.2 + 41262 0.72 0.196885
Target:  5'- --aGCAGCCGUGCGCcgCCUcggcGUCCCa -3'
miRNA:   3'- cccCGUCGGCAUGUGuaGGA----CGGGGc -5'
26255 3' -60 NC_005345.2 + 37992 0.72 0.186837
Target:  5'- cGGGGUgccGCCGUACAUcuugaccaCCgGCCCCGg -3'
miRNA:   3'- -CCCCGu--CGGCAUGUGua------GGaCGGGGC- -5'
26255 3' -60 NC_005345.2 + 13981 0.66 0.437023
Target:  5'- cGGGCuugagcGCCGacuucCACAgCCaUGCCCCGa -3'
miRNA:   3'- cCCCGu-----CGGCau---GUGUaGG-ACGGGGC- -5'
26255 3' -60 NC_005345.2 + 43363 0.72 0.175378
Target:  5'- cGGGGuCGGCCGgguacgGCACGccgagcaccugcgCCUGCgCCCGg -3'
miRNA:   3'- -CCCC-GUCGGCa-----UGUGUa------------GGACG-GGGC- -5'
26255 3' -60 NC_005345.2 + 39042 0.74 0.128415
Target:  5'- uGGGGCAGUCGUcGCGCAUgugCCgcucgGCCCgGa -3'
miRNA:   3'- -CCCCGUCGGCA-UGUGUA---GGa----CGGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.